Evidence map›Paper›PMID 33374797›Full record

ArticleInternational journal of molecular sciences2020

Multiple Recombination Events and Strong Purifying Selection at the Origin of SARS-CoV-2 Spike Glycoprotein Increased Correlated Dynamic Movements.

Massimiliano S Tagliamonte, Nabil Abid, Stefano Borocci, Elisa Sangiovanni, David A Ostrov, Sergei L Kosakovsky Pond, Marco Salemi, Giovanni Chillemi, Carla Mavian

Open access · goldAbstract read
In one paragraph

Article in International journal of molecular sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 19 papers.

0numbers the graph read from it
0cells of the map it votes in
19citing papers in PubMed
0.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

19 citing papers in PubMed, 28 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Progress of the "Molecular Informatics" Section in 2022.International journal of molecular sciences · 2023
    Article
  5. Article
  6. The Spike Mutants Website: A Worldwide Used Resource against SARS-CoV-2.International journal of molecular sciences · 2022
    Article
  7. Article
  8. Review
  9. Article
  10. Article
  11. The SARS-CoV-2 spike protein binds and modulates estrogen receptors.bioRxiv : the preprint server for biology · 2022
    Article
  12. Recombination patterns in coronaviruses.bioRxiv : the preprint server for biology · 2022
    Article
  13. Review
  14. Article
  15. Review
  16. Article
  17. Article
  18. Review
  19. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 4 institutions in 3 countries.

Massimiliano S TagliamonteEmerging Pathogen Institute, University of Florida, Gainesville, FL 32608, USA.ORCID 0000-0003-2699-7331
Nabil AbidLaboratory of Transmissible Diseases and Biological Active Substances LR99ES27, Faculty of Pharmacy, University of Monastir, Rue Ibn Sina, 5000 Monastir, Tunisia.
Stefano BorocciDepartment for Innovation in Biological, Agro-food and Forest Systems (DIBAF), University of Tuscia, via S. Camillo de Lellis s.n.c., 01100 Viterbo, Italy.ORCID 0000-0003-4931-3019
Elisa SangiovanniDepartment for Innovation in Biological, Agro-food and Forest Systems (DIBAF), University of Tuscia, via S. Camillo de Lellis s.n.c., 01100 Viterbo, Italy.
David A OstrovDepartment of Pathology, Immunology and Laboratory Medicine, University of Florida, Gainesville, FL 32610, USA.ORCID 0000-0002-4696-875X
Sergei L Kosakovsky PondDepartment of Biology, Temple University, Philadelphia, PA 19122, USA.
Marco SalemiEmerging Pathogen Institute, University of Florida, Gainesville, FL 32608, USA.
Giovanni ChillemiDepartment for Innovation in Biological, Agro-food and Forest Systems (DIBAF), University of Tuscia, via S. Camillo de Lellis s.n.c., 01100 Viterbo, Italy.ORCID 0000-0003-3901-6926
Carla MavianEmerging Pathogen Institute, University of Florida, Gainesville, FL 32608, USA.ORCID 0000-0003-3819-5520
University of Florida · USUniversità degli Studi della Tuscia · ITTemple University · USUniversity of Monastir · TN

Funding

Turning big data analysis infrastructure for HIV researchR01AI134384 · NIAID · PENNSYLVANIA STATE UNIVERSITY, THE · PI NEKRUTENKO, ANTON, POND, SERGEI L KOSAKOVSKY · 2017 to 2021
$4.2M
HyPhy: Molecular Evolutionary AnalysesR01GM093939 · NIGMS · TEMPLE UNIV OF THE COMMONWEALTH · PI MUSE, SPENCER V., POND, SERGEI L KOSAKOVSKY · 2010 to 2018
$2.5M
NSF Division of Environmental Biology 2028221
6 · The paper itself

Abstract

Our evolutionary and structural analyses revealed that the severe acute respiratory syndrome (SARS) coronavirus 2 (SARS-CoV-2) spike gene is a complex mosaic resulting from several recombination events. Additionally, the fixation of variants has mainly been driven by purifying selection, suggesting the presence of conserved structural features. Our dynamic simulations identified two main long-range covariant dynamic movements of the novel glycoprotein, and showed that, as a result of the evolutionary duality, they are preserved. The first movement involves the receptor binding domain with the

Indexed as

Recombination, GeneticAmino Acid SequenceAnimalsChiropteraCoronavirusEvolution, MolecularHost SpecificityHumansMolecular Dynamics SimulationPangolinsPhylogenyProtein BindingProtein DomainsSARS-CoV-2Spike Glycoprotein, CoronavirusSpike Glycoprotein, Coronavirusspike protein, SARS-CoV-2ACE2bioinformaticsCOVID-19furin-like cleavage sitemolecular dynamicsrecombinationSARS-CoV-2S glycoprotein

Identifiers

PMID33374797
PMCPMC7794730
OpenAlexW3117811827

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.