Evidence map›Paper›PMID 33374382›Full record

ArticleGenes2020

RNA Secondary Structures with Limited Base Pair Span: Exact Backtracking and an Application.

Ronny Lorenz, Peter F Stadler

Abstract read
In one paragraph

Article in Genes, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

2 authors.

Ronny LorenzInstitute for Theoretical Chemistry, University of Vienna, Währingerstraße 17, A-1090 Vienna, Austria.ORCID 0000-0002-2144-698X
Peter F StadlerInstitute for Theoretical Chemistry, University of Vienna, Währingerstraße 17, A-1090 Vienna, Austria.ORCID 0000-0002-5016-5191

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The accuracy of RNA secondary structure prediction decreases with the span of a base pair, i.e., the number of nucleotides that it encloses. The dynamic programming algorithms for RNA folding can be easily specialized in order to consider only base pairs with a limited span

Indexed as

Models, MolecularNucleic Acid ConformationAlgorithmsAnimalsBase PairingCaenorhabditis elegansRNASequence Analysis, RNASoftwareThermodynamicsRNAhyper-stable RNA elementsRNA secondary structure predictionscanning algorithm

Identifiers

PMID33374382
PMCPMC7823788

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.