Evidence map›Paper›PMID 33373218›Full record

ArticleJournal of the American Chemical Society2021

Conformational Plasticity in Human Heme-Based Dioxygenases.

Khoa N Pham, Ariel Lewis-Ballester, Syun-Ru Yeh

Open access · greenAbstract read
In one paragraph

Article in Journal of the American Chemical Society, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.7field-weighted citation impact, top 38% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 19 citations in OpenAlex.

  1. Heme-based dioxygenases: Structure, function and dynamics.Journal of inorganic biochemistry · 2024
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Khoa N PhamDepartment of Physiology and Biophysics, Albert Einstein College of Medicine, The Bronx, New York 10461, United States.ORCID 0000-0001-7449-1226
Ariel Lewis-BallesterDepartment of Physiology and Biophysics, Albert Einstein College of Medicine, The Bronx, New York 10461, United States.
Syun-Ru YehDepartment of Physiology and Biophysics, Albert Einstein College of Medicine, The Bronx, New York 10461, United States.ORCID 0000-0002-9858-386X
Albert Einstein College of Medicine · US

Funding

Structure and Function of Heme-based DioxygenasesR01GM115773 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI YEH, SYUN-RU · 2016 to 2023
$3.3M
Structures of time-resolved intermediates in cytochrome c oxidase obtained by serial femtosecond crystallographyR01GM126297 · NIGMS · ALBERT EINSTEIN COLLEGE OF MEDICINE, INC · PI DENIS L. ROUSSEAU · 2017 to 2026
$3.2M
NIGMS NIH HHS R01 GM115773NIGMS NIH HHS R01 GM126297
6 · The paper itself

Abstract

Human indoleamine 2,3-dioxygenase 1 (hIDO1) and human tryptophan dioxygenase (hTDO) are two important heme proteins that degrade the essential amino acid, l-tryptophan (Trp), along the kynurenine pathway. The two enzymes share a similar active site structure and an analogous catalytic mechanism, but they exhibit a variety of distinct functional properties. Here we used carbon monoxide (CO) as a structural probe to interrogate how the functionalities of the two enzymes are encoded in their structures. With X-ray crystallography, we detected an unexpected photochemical intermediate trapped in a crystal of the hIDO1-CO-Trp complex, where CO is photolyzed from the heme iron by X-rays at cryogenic temperatures (100 K). The CO photolysis triggers a large-scale migration of the substrate Trp, as well as the photolyzed CO, from the active site to a temporary binding site, Sa*. It is accompanied by a large conformational change to an active site loop, JK-Loop

Indexed as

Catalytic DomainCrystallography, X-RayDioxygenasesEnzyme InhibitorsHemeHumansPhotochemical ProcessesProtein ConformationStructure-Activity RelationshipSubstrate SpecificityDioxygenasesEnzyme InhibitorsHeme

Identifiers

PMID33373218
PMCPMC8000349
OpenAlexW3117709935

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.