Evidence map›Paper›PMID 33372613›Full record

ArticleBiotechnology for biofuels2020

Identification of a cytosine methyltransferase that improves transformation efficiency in Methylomonas sp. DH-1.

Jun Ren, Hyang-Mi Lee, Thi Duc Thai, Dokyun Na

Open access · goldAbstract read
In one paragraph

Article in Biotechnology for biofuels, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
1.6field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 16 citations in OpenAlex.

  1. Development of a GFP-labeledApplied and environmental microbiology · 2026
    Article
  2. Article
  3. Review
  4. Review
  5. Emerging methylation-based approaches in microbiome engineering.Biotechnology for biofuels and bioproducts · 2024
    Review
  6. Review
  7. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Jun RenDepartment of Biomedical Engineering, Chung-Ang University, Seoul, 06974, Republic of Korea.
Hyang-Mi LeeDepartment of Biomedical Engineering, Chung-Ang University, Seoul, 06974, Republic of Korea.
Thi Duc ThaiDepartment of Biomedical Engineering, Chung-Ang University, Seoul, 06974, Republic of Korea.
Dokyun NaDepartment of Biomedical Engineering, Chung-Ang University, Seoul, 06974, Republic of Korea. blisszen@cau.ac.kr.ORCID http://orcid.org/0000-0002-9107-7040
Chung-Ang University · KR

Funding

National Research Foundation of Korea NRF-2016M3D3A1A01913244National Research Foundation of Korea NRF-2018R1A5A1025077
6 · The paper itself

Abstract

backgroundIndustrial biofuels and other value-added products can be produced from metabolically engineered microorganisms. Methylomonas sp. DH-1 is a candidate platform for bioconversion that uses methane as a carbon source. Although several genetic engineering techniques have been developed to work with Methylomonas sp. DH-1, the genetic manipulation of plasmids remains difficult because of the restriction-modification (RM) system present in the bacteria. Therefore, the RM system in Methylomonas sp. DH-1 must be identified to improve the genetic engineering prospects of this microorganism.

resultsWe identified a DNA methylation site, TGGCCA, and its corresponding cytosine methyltransferase for the first time in Methylomonas sp. DH-1 through whole-genome bisulfite sequencing. The methyltransferase was confirmed to methylate the fourth nucleotide of TGGCCA. In general, methylated plasmids exhibited better transformation efficiency under the protection of the RM system than non-methylated plasmids did. As expected, when we transformed Methylomonas sp. DH-1 with plasmid DNA harboring the psy gene, the metabolic flux towards carotenoid increased. The methyltransferase-treated plasmid exhibited an increase in transformation efficiency of 2.5 × 10

conclusionsPlasmid DNA methylated by the discovered cytosine methyltransferase from Methylomonas sp. DH-1 had a higher transformation efficiency than non-treated plasmid DNA. The RM system identified in this study may facilitate the plasmid-based genetic manipulation of methanotrophs.

Indexed as

Cytosine methyltransferaseDNA methylationMethylomonas sp. DH-1Transformation efficiency

Identifiers

PMID33372613
PMCPMC7720504
OpenAlexW3113167279

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.