ReviewPhotochemistry and photobiology2021
Frontiers in Multiscale Modeling of Photoreceptor Proteins.
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Review in Photochemistry and photobiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.
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17citing papers in PubMed
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17 citing papers in PubMed.
- Structural, color, and stability properties of hydrogen peroxide-treated phycoerythrin-based colorant proteins from dried laver (Food chemistry: X · 2026Article
- Water-modulated conformational heterogeneity underlies multiple timescales of primary charge separation in photosystem II.Nature communications · 2026Article
- Weak Radiofrequency Field Effects on Biological Systems Mediated through the Radical Pair Mechanism.Chemical reviews · 2025Review
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- Transitioning enzyme catalysis towards photocatalysis.Philosophical transactions. Series A, Mathematical, physical, and engineering sciences · 2025Review
- Improved Description of Environment and Vibronic Effects with Electrostatically Embedded ML Potentials.The journal of physical chemistry letters · 2025Article
- Condensed Matter Systems Exposed to Radiation: Multiscale Theory, Simulations, and Experiment.Chemical reviews · 2024Review
- Magnetic orientation in juvenile Atlantic herring (Journal of the Royal Society, Interface · 2024Article
- Introducing the Automated Ligand Searcher.Journal of chemical information and modeling · 2023Article
- Evidence of a Distinctive Enantioselective Binding Mode for the Photoinduced Radical Cyclization of α-Chloroamides in Ene-Reductases.ACS catalysis · 2023Article
- The OpenMolcasJournal of chemical theory and computation · 2023Article
- Detailed analysis of distorted retinal and its interaction with surrounding residues in the K intermediate of bacteriorhodopsin.Communications biology · 2023Article
- Photoactive Yellow Protein Represents a Distinct, Evolutionarily Novel Family of PAS Domains.Journal of bacteriology · 2022Article
- Retinal chromophore charge delocalization and confinement explain the extreme photophysics of Neorhodopsin.Nature communications · 2022Article
- Evolution of the Automatic Rhodopsin Modeling (ARM) Protocol.Topics in current chemistry (Cham) · 2022Review
- Rhodopsins: An Excitingly Versatile Protein Species for Research, Development and Creative Engineering.Frontiers in chemistry · 2022Review
- Pro219 is an electrostatic color determinant in the light-driven sodium pump KR2.Communications biology · 2021Article
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Authors and funding
39 authors.
Maria-Andrea MroginskiInstitut für Chemie, Technische Universität Berlin, Berlin, Germany.ORCID 0000-0002-7497-5631
Suliman AdamInstitute of Chemistry, The Hebrew University of Jerusalem, Jerusalem, Israel.ORCID 0000-0002-0891-5008
Gil S AmoyalInstitute of Chemistry, The Hebrew University of Jerusalem, Jerusalem, Israel.ORCID 0000-0002-2505-4692
Avishai BarnoyInstitute of Chemistry, The Hebrew University of Jerusalem, Jerusalem, Israel.ORCID 0000-0001-9598-7044
Ana-Nicoleta BondarFreie Universität Berlin, Department of Physics, Theoretical Molecular Biophysics Group, Berlin, Germany.
Veniamin A BorinInstitute of Chemistry, The Hebrew University of Jerusalem, Jerusalem, Israel.ORCID 0000-0001-7832-1443
Jonathan R ChurchInstitute of Chemistry, The Hebrew University of Jerusalem, Jerusalem, Israel.ORCID 0000-0001-5986-1305
Tatiana DomratchevaDepartment of Chemistry, Lomonosov Moscow State University, Moscow, Russia.ORCID 0000-0002-7001-1114
Bernd EnsingVan 't Hoff Institute for Molecular Science and Amsterdam Center for Multiscale Modeling, University of Amsterdam, Amsterdam, The Netherlands.ORCID 0000-0002-4913-3571
Francesca FanelliDepartment of Life Sciences, Center for Neuroscience and Neurotechnology, Università degli Studi di Modena e Reggio Emilia, Modena, Italy.
Nicolas FerréAix-Marseille Univ, CNRS, ICR, Marseille, France.ORCID 0000-0002-5583-8834
Ofer FilibaInstitute of Chemistry, The Hebrew University of Jerusalem, Jerusalem, Israel.ORCID 0000-0003-4999-5443
Laura Pedraza-GonzálezDepartment of Biotechnology, Chemistry and Pharmacy, Università degli Studi di Siena, Siena, Italy.ORCID 0000-0002-9806-236X
Ronald GonzálezInstitut für Chemie, Technische Universität Berlin, Berlin, Germany.ORCID 0000-0003-2520-1215
Cristina E González-EspinozaDépartement de Chimie Physique, Université de Genève, Genève, Switzerland.
Rajiv K KarInstitute of Chemistry, The Hebrew University of Jerusalem, Jerusalem, Israel.ORCID 0000-0003-4629-5863
Lukas KemmlerFreie Universität Berlin, Department of Physics, Theoretical Molecular Biophysics Group, Berlin, Germany.
Seung Soo KimDepartment of Chemistry, Korea Advanced Institute of Science and Technology, Daejeon, Korea.ORCID 0000-0002-1179-9765
Jacob KongstedDepartment of Physics, Chemistry and Pharmacy, University of Southern Denmark, Odense, Denmark.ORCID 0000-0002-7725-2164
Anna I KrylovDepartment of Chemistry, University of Southern California, Los Angeles, CA, USA.ORCID 0000-0001-6788-5016
Yigal LahavInstitute of Chemistry, The Hebrew University of Jerusalem, Jerusalem, Israel.ORCID 0000-0002-4011-8244
Michalis LazaratosFreie Universität Berlin, Department of Physics, Theoretical Molecular Biophysics Group, Berlin, Germany.ORCID 0000-0001-7587-6769
Qays NasserEddinInstitute of Chemistry, The Hebrew University of Jerusalem, Jerusalem, Israel.ORCID 0000-0002-4385-9355
Isabelle NavizetMSME, Univ Gustave Eiffel, CNRS UMR 8208, Univ Paris Est Creteil, Marne-la-Vallée, France.ORCID 0000-0002-2158-6157
Alexander NemukhinDepartment of Chemistry, Lomonosov Moscow State University, Moscow, Russia.ORCID 0000-0002-4992-6029
Massimo OlivucciDepartment of Biotechnology, Chemistry and Pharmacy, Università degli Studi di Siena, Siena, Italy.ORCID 0000-0002-8247-209X
Jógvan Magnus Haugaard OlsenDepartment of Chemistry, Aarhus University, Aarhus, Denmark.ORCID 0000-0001-7487-944X
Alberto Pérez de Alba OrtízVan 't Hoff Institute for Molecular Science and Amsterdam Center for Multiscale Modeling, University of Amsterdam, Amsterdam, The Netherlands.ORCID 0000-0003-4776-5521
Elisa PieriAix-Marseille Univ, CNRS, ICR, Marseille, France.ORCID 0000-0002-5377-5382
Aditya G RaoInstitute of Chemistry, The Hebrew University of Jerusalem, Jerusalem, Israel.ORCID 0000-0001-6771-9157
Young Min RheeDepartment of Chemistry, Korea Advanced Institute of Science and Technology, Daejeon, Korea.ORCID 0000-0002-2392-3962
Niccolò RicardiDépartement de Chimie Physique, Université de Genève, Genève, Switzerland.
Saumik SenInstitute of Chemistry, The Hebrew University of Jerusalem, Jerusalem, Israel.ORCID 0000-0002-7490-0517
Ilia A Solov'yovDepartment of Physics, Carl von Ossietzky University Oldenburg, Oldenburg, Germany.ORCID 0000-0002-8626-145X
Luca De VicoDepartment of Biotechnology, Chemistry and Pharmacy, Università degli Studi di Siena, Siena, Italy.ORCID 0000-0002-2821-5711
Tomasz A WesolowskiDépartement de Chimie Physique, Université de Genève, Genève, Switzerland.ORCID 0000-0001-5792-4616
Christian WiebelerInstitute of Chemistry, The Hebrew University of Jerusalem, Jerusalem, Israel.ORCID 0000-0003-1286-0860
Xuchun YangChemistry Department, Bowling Green State University, Bowling Green, OH, USA.
Igor SchapiroInstitute of Chemistry, The Hebrew University of Jerusalem, Jerusalem, Israel.ORCID 0000-0001-8536-6869
Funding
Computational Design of Highly Fluorescent RhodopsinsR15GM126627 · NIGMS · BOWLING GREEN STATE UNIVERSITY · PI OLIVUCCI, MASSIMO · 2018 to 2018
$337kNIGMS NIH HHS R15 GM126627NIH HHS 1R15GM126627Swiss National Science Foundation 200020-172532
Abstract
This perspective article highlights the challenges in the theoretical description of photoreceptor proteins using multiscale modeling, as discussed at the CECAM workshop in Tel Aviv, Israel. The participants have identified grand challenges and discussed the development of new tools to address them. Recent progress in understanding representative proteins such as green fluorescent protein, photoactive yellow protein, phytochrome, and rhodopsin is presented, along with methodological developments.
Indexed as
Models, MolecularBacterial ProteinsGreen Fluorescent ProteinsPhotoreceptors, MicrobialPhytochromePoisson DistributionQuantum TheoryRhodopsinStatic ElectricityBacterial ProteinsGreen Fluorescent Proteinsphotoactive yellow protein, BacteriaPhotoreceptors, MicrobialPhytochromeRhodopsin
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