Evidence map›Paper›PMID 33365032›Full record

ArticleFrontiers in immunology2020

Essentially Leading Antibody Production: An Investigation of Amino Acids, Myeloma, and Natural V-Region Signal Peptides in Producing Pertuzumab and Trastuzumab Variants.

Wei-Li Ling, Chinh Tran-To Su, Wai-Heng Lua, Jun-Jie Poh, Yuen-Ling Ng, Anil Wipat, Samuel Ken-En Gan

Open access · goldAbstract readComparative Study
In one paragraph

Article in Frontiers in immunology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 12 papers.

0numbers the graph read from it
0cells of the map it votes in
12citing papers in PubMed
1.3field-weighted citation impact, top 20% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

12 citing papers in PubMed, 18 citations in OpenAlex.

  1. Review
  2. Article
  3. Review
  4. Article
  5. Article
  6. Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Review
  12. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 5 institutions in 1 country.

Wei-Li LingBioinformatics Institute, Agency for Science, Technology and Research (ASTAR), Singapore, Singapore.
Chinh Tran-To SuBioinformatics Institute, Agency for Science, Technology and Research (ASTAR), Singapore, Singapore.
Wai-Heng LuaBioinformatics Institute, Agency for Science, Technology and Research (ASTAR), Singapore, Singapore.
Jun-Jie PohBioinformatics Institute, Agency for Science, Technology and Research (ASTAR), Singapore, Singapore.
Yuen-Ling NgNewcastle Research and Innovation Institute (NewRIIS), Singapore, Singapore.
Anil WipatSchool of Computing, Newcastle University, Singapore, Singapore.
Samuel Ken-En GanBioinformatics Institute, Agency for Science, Technology and Research (ASTAR), Singapore, Singapore.
Agency for Science, Technology and Research · SGBioinformatics Institute · SGAlbany Molecular Research (Singapore) · SGExperimental Drug Development Centre · SGNewcastle University Singapore · SG

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Boosting the production of recombinant therapeutic antibodies is crucial in both academic and industry settings. In this work, we investigated the usage of varying signal peptides by antibody V-genes and their roles in recombinant transient production, systematically comparing myeloma and the native signal peptides of both heavy and light chains in 168 antibody permutation variants. We found that amino acids count and types (essential or non-essential) were important factors in a logistic regression equation model for predicting transient co-transfection protein production rates. Deeper analysis revealed that the culture media were often incomplete and that the supplementation of essential amino acids can improve the recombinant protein yield. While these findings are derived from transient HEK293 expression, they also provide insights to the usage of the large repertoire of antibody signal peptides, where by varying the number of specific amino acids in the signal peptides attached to the variable regions, bottlenecks in amino acid availability can be mitigated.

Indexed as

BiotechnologyImmunoglobulin Variable RegionProtein EngineeringProtein Sorting SignalsAmino AcidsAntibodies, Monoclonal, HumanizedAntineoplastic Agents, ImmunologicalCulture MediaHEK293 CellsHumansImmunoglobulin EMultiple MyelomaRecombinant ProteinsTrastuzumabWorkflowAmino AcidsAntibodies, Monoclonal, HumanizedAntineoplastic Agents, ImmunologicalCulture MediaImmunoglobulin EImmunoglobulin Variable RegionpertuzumabProtein Sorting SignalsRecombinant ProteinsTrastuzumabantibody familiesantibody leadersessential amino acidlogistic regressionmyelomanon-essential amino acidrecombinant productionsignal peptide

Identifiers

PMID33365032
PMCPMC7750424
OpenAlexW3112106938

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.