ArticleJournal of advanced research2021
Bin-based genome-wide association studies reveal superior alleles for improvement of appearance quality using a 4-way MAGIC population in rice.
Article in Journal of advanced research, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 13 papers.
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Who cites it
13 citing papers in PubMed, 31 citations in OpenAlex.
- MAGIC populations: a next-generation framework for dissecting complex quantitative traits and accelerating molecular breeding in crops.Frontiers in plant science · 2026Review
- Powerful QTL mapping and favorable allele mining in an all-in-one population: a case study of heading date.National science review · 2024Article
- Mapping of qChalk1 controlling grain chalkiness in japonica rice.Molecular biology reports · 2023Article
- Genome-Wide Association Study of Rice Grain Shape and Chalkiness in a Worldwide Collection of Xian Accessions.Plants (Basel, Switzerland) · 2023Article
- Rice yield penalty and quality deterioration is associated with failure of nitrogen uptake from regreening to panicle initiation stage under salinity.Frontiers in plant science · 2023Article
- Combined Effects of Different Alleles ofPlants (Basel, Switzerland) · 2022Article
- Low Light Stress Increases Chalkiness by Disturbing Starch Synthesis and Grain Filling of Rice.International journal of molecular sciences · 2022Article
- Genotyping-by-sequencing and genome-wide association study reveal genetic diversity and loci controlling agronomic traits in triticale.TAG. Theoretical and applied genetics. Theoretische und angewandte Genetik · 2022Article
- Five plants per RIL for phenotyping traits of high or moderate heritability ensure the power of QTL mapping in a rice MAGIC population.Molecular breeding : new strategies in plant improvement · 2022Article
- Study on the Effect of Salt Stress on Yield and Grain Quality Among Different Rice Varieties.Frontiers in plant science · 2022Article
- Genetic and molecular factors in determining grain number per panicle of rice.Frontiers in plant science · 2022Review
- The identification of grain size genes by RapMap reveals directional selection during rice domestication.Nature communications · 2021Article
- Identification and Pleiotropic Effect Analysis ofFrontiers in plant science · 2021Article
Corrections and comments
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Authors and funding
7 authors at 3 institutions in 2 countries.
Funding
No grant is acknowledged in the PubMed record.
Abstract
introductionThe multiparental population provides us the chance to identify superior alleles controlling a trait for genetic improvement. Genome wide association studies at bin level (bin-GWAS) are expected to be more power in QTL mapping than GWAS at SNP level (SNP-GWAS).
objectivesThis study is to estimate genetic effects of QTL conferring grain appearance quality in rice by SNP-GWAS and bin-GWAS, compare their power in QTL mapping and identify the superior alleles of all detected QTL from 4 parents for genetic improvement.
methodsA 4-way MAGIC population and its four founders were cultivated in two environments to dissect the genetic basis of rice grain appearance quality. Both SNP-GWAS and bin-GWAS were conducted for QTL mapping. Multiple comparison among 4 parental bin/alleles was used to identify the superior alleles.
resultsA total of 16 and 20 QTL associated with grain appearance quality were identified by SNP- and bin-GWAS, respectively. A minor chalkiness QTL
conclusionsBoth SNP- and bin-GWAS methods are encouraged for joint QTL mapping with MAGIC population. q
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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.