Evidence map›Paper›PMID 33362778›Full record

ArticleFrontiers in immunology2020

Intestinal Transcriptome Analysis Reveals Soy Derivative-Linked Changes in Atlantic Salmon.

Viswanath Kiron, Youngjin Park, Prabhugouda Siriyappagouder, Dalia Dahle, Ghana K Vasanth, Jorge Dias, Jorge M O Fernandes, Mette Sørensen, Viviane Verlhac Trichet

Open access · goldAbstract read
In one paragraph

Article in Frontiers in immunology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 21 papers.

0numbers the graph read from it
0cells of the map it votes in
21citing papers in PubMed
6.4field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

21 citing papers in PubMed, 48 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 3 countries.

Viswanath KironFaculty of Biosciences and Aquaculture, Nord University, Bodø, Norway.
Youngjin ParkFaculty of Biosciences and Aquaculture, Nord University, Bodø, Norway.
Prabhugouda SiriyappagouderFaculty of Biosciences and Aquaculture, Nord University, Bodø, Norway.
Dalia DahleFaculty of Biosciences and Aquaculture, Nord University, Bodø, Norway.
Ghana K VasanthFaculty of Biosciences and Aquaculture, Nord University, Bodø, Norway.
Jorge DiasSPAROS Lda., Olhão, Portugal.
Jorge M O FernandesFaculty of Biosciences and Aquaculture, Nord University, Bodø, Norway.
Mette SørensenFaculty of Biosciences and Aquaculture, Nord University, Bodø, Norway.
Viviane Verlhac TrichetDSM Nutritional Products, Global Innovation, Kaiseraugst, Switzerland.
Nord University · NODSM (Switzerland) · CHSparos (Portugal) · PT

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Intestinal inflammation in farmed fish is a non-infectious disease that deserves attention because it is a major issue linked to carnivorous fishes. The current norm is to formulate feeds based on plant-derived substances, and the ingredients that have antinutritional factors are known to cause intestinal inflammation in fishes such as Atlantic salmon. Hence, we studied inflammatory responses in the distal intestine of Atlantic salmon that received a feed rich in soybean derivatives, employing histology, transcriptomic and flow cytometry techniques. The fish fed on soy products had altered intestinal morphology as well as upregulated inflammation-associated genes and aberrated ion transport-linked genes. The enriched pathways for the upregulated genes were among others taurine and hypotaurine metabolism, drug metabolism-cytochrome P450 and steroid biosynthesis. The enriched gene ontology terms belonged to transmembrane transporter- and channel-activities. Furthermore, soybean products altered the immune cell counts; lymphocyte-like cell populations were significantly higher in the whole blood of fish fed soy products than those of control fish. Interestingly, the transcriptome of the head kidney did not reveal any differential gene expression, unlike the observations in the distal intestine. The present study demonstrated that soybean derivatives could evoke marked changes in intestinal transport mechanisms and metabolic pathways, and these responses are likely to have a significant impact on the intestine of Atlantic salmon. Hence, soybean-induced enteritis in Atlantic salmon is an ideal model to investigate the inflammatory responses at the cellular and molecular levels.

Indexed as

TranscriptomeAnimalsComputational BiologyGene Expression ProfilingGene Expression RegulationGlycine maxHigh-Throughput Nucleotide SequencingIntestinal MucosaIntestinesPlant ExtractsSalmo salarPlant Extractsaquafeedflow cytometryintestinal inflammationSalmo salarsoy saponin

Identifiers

PMID33362778
PMCPMC7759687
OpenAlexW3112700824

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.