Evidence map›Paper›PMID 33362265›Full record

ArticlePloS one2020

Random regression for modeling yield genetic trajectories in Jatropha curcas breeding.

Marco Antônio Peixoto, Rodrigo Silva Alves, Igor Ferreira Coelho, Jeniffer Santana Pinto Coelho Evangelista, Marcos Deon Vilela de Resende, João Romero do Amaral Santos de Carvalho Rocha, Fabyano Fonseca E Silva, Bruno Gâlveas Laviola, Leonardo Lopes Bhering

Abstract read
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 3 papers.

0numbers the graph read from it
0cells of the map it votes in
3citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

3 citing papers in PubMed.

  1. Article
  2. Article
  3. Genomic selection in tropical perennial crops and plantation trees: a review.Molecular breeding : new strategies in plant improvement · 2022
    Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Marco Antônio PeixotoUniversidade Federal de Viçosa, Viçosa, MG, Brazil.ORCID 0000-0003-0564-7068
Rodrigo Silva AlvesINCT Café/Universidade Federal de Viçosa, Viçosa, MG, Brazil.
Igor Ferreira CoelhoUniversidade Federal de Viçosa, Viçosa, MG, Brazil.
Jeniffer Santana Pinto Coelho EvangelistaUniversidade Federal de Viçosa, Viçosa, MG, Brazil.
Marcos Deon Vilela de ResendeEmbrapa Café/Universidade Federal de Viçosa, Viçosa, MG, Brazil.
João Romero do Amaral Santos de Carvalho RochaUniversidade Federal de Viçosa, Viçosa, MG, Brazil.
Fabyano Fonseca E SilvaUniversidade Federal de Viçosa, Viçosa, MG, Brazil.
Bruno Gâlveas LaviolaEmbrapa Agroenergia, Brasília, DF, Brazil.
Leonardo Lopes BheringUniversidade Federal de Viçosa, Viçosa, MG, Brazil.ORCID 0000-0002-6072-0996

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Random regression models (RRM) are a powerful tool to evaluate genotypic plasticity over time. However, to date, RRM remains unexplored for the analysis of repeated measures in Jatropha curcas breeding. Thus, the present work aimed to apply the random regression technique and study its possibilities for the analysis of repeated measures in Jatropha curcas breeding. To this end, the grain yield (GY) trait of 730 individuals of 73 half-sib families was evaluated over six years. Variance components were estimated by restricted maximum likelihood, genetic values were predicted by best linear unbiased prediction and RRM were fitted through Legendre polynomials. The best RRM was selected by Bayesian information criterion. According to the likelihood ratio test, there was genetic variability among the Jatropha curcas progenies; also, the plot and permanent environmental effects were statistically significant. The variance components and heritability estimates increased over time. Non-uniform trajectories were estimated for each progeny throughout the measures, and the area under the trajectories distinguished the progenies with higher performance. High accuracies were found for GY in all harvests, which indicates the high reliability of the results. Moderate to strong genetic correlation was observed across pairs of harvests. The genetic trajectories indicated the existence of genotype × measurement interaction, once the trajectories crossed, which implies a different ranking in each year. Our results suggest that RRM can be efficiently applied for genetic selection in Jatropha curcas breeding programs.

Indexed as

Models, GeneticPlant BreedingBiological Variation, PopulationGenetic VariationJatropha

Identifiers

PMID33362265
PMCPMC7757908

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.