Evidence map›Paper›PMID 33361583›Full record

ArticleCancer biomarkers : section A of Disease markers2021

Integrative analysis of transcriptional profile reveals LINC00052 as a suppressor of breast cancer cell migration.

Jose Manuel Sanchez-Lopez, Edna Ayerim Mandujano-Tinoco, Alfredo Garcia-Venzor, Laura Fatima Lozada-Rodriguez, Cecilia Zampedri, Salvador Uribe-Carvajal, Jorge Melendez-Zajgla, Vilma Maldonado, Floria Lizarraga

Abstract read
In one paragraph

Article in Cancer biomarkers : section A of Disease markers, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 4 papers.

0numbers the graph read from it
0cells of the map it votes in
4citing papers in PubMed
0.2field-weighted citation impact, top 51% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

4 citing papers in PubMed, 5 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Jose Manuel Sanchez-LopezEpigenetics Laboratory, Instituto Nacional de Medicina Genómica, Mexico City, Mexico.
Edna Ayerim Mandujano-TinocoEpigenetics Laboratory, Instituto Nacional de Medicina Genómica, Mexico City, Mexico.
Alfredo Garcia-VenzorEpigenetics Laboratory, Instituto Nacional de Medicina Genómica, Mexico City, Mexico.
Laura Fatima Lozada-RodriguezEpigenetics Laboratory, Instituto Nacional de Medicina Genómica, Mexico City, Mexico.
Cecilia ZampedriEpigenetics Laboratory, Instituto Nacional de Medicina Genómica, Mexico City, Mexico.
Salvador Uribe-CarvajalDepartment of Molecular Genetics, Instituto de Fisiología Celular, Universidad Nacional Autónoma de México, Mexico City, Mexico.
Jorge Melendez-ZajglaFunctional Genomics Laboratory, Instituto Nacional de Medicina Genómica, Mexico City, Mexico.
Vilma MaldonadoEpigenetics Laboratory, Instituto Nacional de Medicina Genómica, Mexico City, Mexico.
Floria LizarragaEpigenetics Laboratory, Instituto Nacional de Medicina Genómica, Mexico City, Mexico.
National Institute of Genomic Medicine · MXInstituto Nacional de Rehabilitación · MXUniversidad Nacional Autónoma de México · MX

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundLong-non-coding RNAs, a class of transcripts with lengths > 200 nt, play key roles in tumour progression. Previous reports revealed that LINC00052 (long intergenic non-coding RNA 00052) was strongly downregulated during breast cancer multicellular spheroids formation and suggested a role in cell migration and oxidative metabolism.

objectiveTo examine the function of LINC00052 in MCF-7 breast cancer cells.

methodsLoss-of-function studies were performed to evaluate LINC00052 role on MCF-7 breast cancer cells. Microarray expression assays were performed to determine genes and cellular functions modified after LINC00052 knockdown. Next, the impact of LINC00052 depletion on MCF-7 cell respiration and migration was evaluated.

results1,081 genes were differentially expressed upon LINC00052 inhibition. Gene set enrichment analysis, Gene Ontology and Key Pathway Advisor analysis showed that signalling networks related to cell migration and oxidative phosphorylation were enriched. However, whereas LINC00052 knockdown in MCF-7 cells revealed marginal difference in oxygen consumption rates when compared with control cells, LINC00052 inhibition enhanced cell migration in vitro and in vivo, as observed using a Zebrafish embryo xenotransplant model.

conclusionOur data show that LINC00052 modulates MCF-7 cell migration. Genome-wide microarray experiments suggest that cancer cell migration is affected by LINC00052 through cytoskeleton modulation and Notch/β-catenin/NF-κB signalling pathways.

Indexed as

AnimalsBreast NeoplasmsCell MovementFemaleGene Expression Regulation, NeoplasticHumansRNA, Long NoncodingZebrafishRNA, Long Noncodingbreast cancercell migrationLINC00052transcriptome analysis

Identifiers

PMID33361583
PMCPMC12499991
OpenAlexW3116053242

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.