Evidence map›Paper›PMID 33361417›Full record

ArticleJournal of virology2021

Relative DNA Methylation and Demethylation Efficiencies during Postnatal Liver Development Regulate Hepatitis B Virus Biosynthesis.

Claudia E Oropeza, Grant Tarnow, Taha Y Taha, Rasha E Shalaby, Marieta V Hyde, Mark Maienschein-Cline, Stefan J Green, Alan McLachlan

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.7field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 2 institutions in 2 countries.

Claudia E OropezaDepartment of Microbiology and Immunology, College of Medicine, University of Illinois at Chicago, Chicago, Illinois, USA.
Grant TarnowDepartment of Microbiology and Immunology, College of Medicine, University of Illinois at Chicago, Chicago, Illinois, USA.
Taha Y TahaDepartment of Microbiology and Immunology, College of Medicine, University of Illinois at Chicago, Chicago, Illinois, USA.ORCID 0000-0002-7344-7490
Rasha E ShalabyDepartment of Microbiology and Immunology, College of Medicine, University of Illinois at Chicago, Chicago, Illinois, USA.
Marieta V HydeResearch Resources Center, College of Medicine, University of Illinois at Chicago, Chicago, Illinois, USA.
Mark Maienschein-ClineResearch Resources Center, College of Medicine, University of Illinois at Chicago, Chicago, Illinois, USA.
Stefan J GreenResearch Resources Center, College of Medicine, University of Illinois at Chicago, Chicago, Illinois, USA.ORCID 0000-0003-2781-359X
Alan McLachlanDepartment of Microbiology and Immunology, College of Medicine, University of Illinois at Chicago, Chicago, Illinois, USA mclach@uic.edu.ORCID 0000-0002-4168-2365
University of Illinois Chicago · USTanta University · EG

Funding

Developmental regulation of HBV biosynthesis by FoxA and DNA methylationR01AI125401 · NIAID · UNIVERSITY OF ILLINOIS AT CHICAGO · PI MCLACHLAN, ALAN · 2016 to 2020
$2.0M
Liver lobule zonation, hepatocellular carcinoma (HCC) and β-catenin mediated hepatitis B virus (HBV) biosynthesisR01CA238328 · NCI · UNIVERSITY OF ILLINOIS AT CHICAGO · PI MCLACHLAN, ALAN · 2020 to 2024
$1.8M
NCI NIH HHS R01 CA238328NIAID NIH HHS R01 AI125401
6 · The paper itself

Abstract

Hepatitis B virus (HBV) transcription and replication increase progressively throughout postnatal liver development with maximal viral biosynthesis occurring at around 4 weeks of age in the HBV transgenic mouse model of chronic infection. Increasing viral biosynthesis is associated with a corresponding progressive loss of DNA methylation. The loss of DNA methylation is associated with increasing levels of 5-hydroxymethylcytosine (5hmC) residues which correlate with increased liver-enriched pioneer transcription factor Forkhead box protein A (FoxA) RNA levels, a rapid decline in postnatal liver DNA methyltransferase (Dnmt) transcripts, and a very modest reduction in ten-eleven translocation (Tet) methylcytosine dioxygenase expression. These observations are consistent with the suggestion that the balance between active HBV DNA methylation and demethylation is regulated by FoxA recruitment of Tet in the presence of declining Dnmt activity. These changes lead to demethylation of the viral genome during hepatocyte maturation with associated increases in viral biosynthesis. Consequently, manipulation of the relative activities of these two counterbalancing processes might permit the specific silencing of HBV gene expression with the loss of viral biosynthesis and the resolution of chronic HBV infections.

Indexed as

5-MethylcytosineAnimalsAnimals, NewbornDemethylationDioxygenasesDisease Models, AnimalDNA (Cytosine-5-)-MethyltransferasesDNA MethylationDNA ReplicationDNA, ViralGene Expression Regulation, DevelopmentalGene Expression Regulation, ViralHepatitis B, ChronicHepatitis B virusHepatocyte Nuclear FactorsLiver5-hydroxymethylcytosine5-MethylcytosineDioxygenasesDNA (Cytosine-5-)-MethyltransferasesDNA, ViralHepatocyte Nuclear FactorsRNA, ViralTet3 protein, mouse5-hydroxymethylcytosine (5hmC)5-methylcytosine (5mC)DNA demethylationDNA methylationDNA methyltransferase (Dnmt)Forkhead box protein A (FoxA)hepatitis B virus (HBV)liver developmentten-eleven translocation (Tet) methylcytosine dioxygenase

Identifiers

PMID33361417
PMCPMC8094951
OpenAlexW3114280552

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.