Evidence map›Paper›PMID 33361333›Full record

ArticleProceedings of the National Academy of Sciences of the United States of America2021

Structure of SARS-CoV-2 ORF8, a rapidly evolving immune evasion protein.

Thomas G Flower, Cosmo Z Buffalo, Richard M Hooy, Marc Allaire, Xuefeng Ren, James H Hurley

Abstract read
In one paragraph

Article in Proceedings of the National Academy of Sciences of the United States of America, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 164 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
164citing papers in PubMed, 4 pooled it
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

164 citing papers in PubMed, 4 syntheses or guidelines pooled it.

  1. Pooled it
  2. Pooled it
  3. Severe Acute Respiratory Syndrome Coronavirus 2 (SARS-CoV-2) Sequence Characteristics of Coronavirus Disease 2019 (COVID-19) Persistence and Reinfection.Clinical infectious diseases : an official publication of the Infectious Diseases Society of America · 2022
    Pooled it
  4. Pooled it
  5. Article
  6. Review
  7. Article
  8. Article
  9. Review
  10. COVID-19 and Lung Cancer Interactions: A Literature Review.Medical sciences (Basel, Switzerland) · 2025
    Review
  11. Review
  12. The Recurring Loss of ORF8 Secretion in Dominant SARS-CoV-2 Variants.International journal of molecular sciences · 2025
    Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. Article
  18. Review
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104 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

6 authors.

Thomas G FlowerDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720.ORCID 0000-0002-7890-6473
Cosmo Z BuffaloDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720.ORCID 0000-0002-8187-4660
Richard M HooyDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720.ORCID 0000-0001-8917-0249
Marc AllaireMolecular Biophysics & Integrated Bioimaging Division, Lawrence Berkeley National Laboratory, Berkeley, CA 94720.ORCID 0000-0002-4786-2420
Xuefeng RenDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720.ORCID 0000-0002-4822-4316
James H HurleyDepartment of Molecular and Cell Biology, University of California, Berkeley, CA 94720; jimhurley@berkeley.edu.ORCID 0000-0001-5054-5445

Funding

User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI PAUL David ADAMS · 2017 to 2026
$28.6M
X-ray Screening and Rapid Structure DeterminationP50AI150476 · NIAID · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI EMERMAN, MICHAEL · 2019 to 2021
$14.4M
Allostery and Hijacking of Host Membrane Traffic by HIV-1 Accessory ProteinsR01AI120691 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI HURLEY, JAMES H · 2015 to 2024
$6.1M
Biochemical, Biophysical, and Structural Mechanisms of HIV-1 Budding and ReleaseR37AI112442 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI James H Hurley · 2019 to 2026
$4.3M
Structural basis for HIV-1 Nef downregulation of MHC-I: defining the role of membrane interactions in Nef-driven (re)organization of clathrin adaptor AP-1 assembliesF32AI152971 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI HOOY, RICHARD · 2020 to 2022
$198k
Mechanisms for HIV-1 Nef Hijacking of the Clathrin PathwayF32AI150495 · NIAID · UNIVERSITY OF CALIFORNIA BERKELEY · PI BUFFALO, COSMO ZEPHYRUS · 2020 to 2020
$67k
Howard Hughes Medical InstituteNIAID NIH HHS F32 AI150495NIAID NIH HHS F32 AI152971NIAID NIH HHS P50 AI150476NIAID NIH HHS R01 AI120691NIAID NIH HHS R37 AI112442NIGMS NIH HHS P30 GM124169
6 · The paper itself

Abstract

The molecular basis for the severity and rapid spread of the COVID-19 disease caused by severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) is largely unknown. ORF8 is a rapidly evolving accessory protein that has been proposed to interfere with immune responses. The crystal structure of SARS-CoV-2 ORF8 was determined at 2.04-Å resolution by X-ray crystallography. The structure reveals a ∼60-residue core similar to SARS-CoV-2 ORF7a, with the addition of two dimerization interfaces unique to SARS-CoV-2 ORF8. A covalent disulfide-linked dimer is formed through an N-terminal sequence specific to SARS-CoV-2, while a separate noncovalent interface is formed by another SARS-CoV-2-specific sequence,

Indexed as

Molecular StructureEvolution, MolecularImmune EvasionSARS-CoV-2Viral ProteinsORF8 protein, SARS-CoV-2Viral ProteinsCOVID-19SARS-CoV-2X-ray crystallography

Identifiers

PMID33361333
PMCPMC7812859

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.