Evidence map›Paper›PMID 33361124›Full record

ArticlemSphere2020

Analysis of Serial Multidrug-Resistant Tuberculosis Strains Causing Treatment Failure and Within-Host Evolution by Whole-Genome Sequencing.

Xinchang Chen, Guiqing He, Siran Lin, Shiyong Wang, Feng Sun, Jiazhen Chen, Wenhong Zhang

Open access · goldAbstract read
In one paragraph

Article in mSphere, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 14 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed, 1 pooled it
0.3field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 1 synthesis or guideline pooled it, 18 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Review
  4. Review
  5. Review
  6. Article
  7. Review
  8. Article
  9. Article
  10. Clinical and Microbiological Characteristics ofInfection and drug resistance · 2023
    Article
  11. Infection and drug resistance · 2023
    Article
  12. Review
  13. Understanding the contribution of metabolism toFrontiers in cellular and infection microbiology · 2022
    Review
  14. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 1 country.

Xinchang Chen *Department of Infectious Diseases, Huashan Hospital, Fudan University, Shanghai, China.
Guiqing He *Department of Infectious Diseases, Wenzhou Central Hospital, Affiliated Dingli Clinical Institute of Wenzhou Medical University, Wenzhou, China.
Siran LinDepartment of Infectious Diseases, Huashan Hospital, Fudan University, Shanghai, China.
Shiyong WangDepartment of Infectious Diseases, Huashan Hospital, Fudan University, Shanghai, China.
Feng SunDepartment of Infectious Diseases, Huashan Hospital, Fudan University, Shanghai, China.
Jiazhen Chen *Department of Infectious Diseases, Huashan Hospital, Fudan University, Shanghai, China jiazhen_chen@163.com zhangwenhong@fudan.edu.cn.
Wenhong Zhang *Department of Infectious Diseases, Huashan Hospital, Fudan University, Shanghai, China jiazhen_chen@163.com zhangwenhong@fudan.edu.cn.ORCID 0000-0002-9165-3212
Fudan University · CNShanghai Medical College of Fudan University · CNWenzhou Medical University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The cure rate of multidrug-resistant tuberculosis (MDR-TB) is relatively low in China. The reasons for the treatment failure and within-host evolution during treatment have not been sufficiently studied. All MDR-TB patients receiving standard treatment from January 2014 to September 2016 at a designated TB Hospital in Zhejiang Province were retrospectively included and grouped according to their known treatment outcome. Clinical information was collected. Baseline strains of all patients and serial strains of treatment-failure patients were revived. Drug susceptibility tests (DSTs) of 14 drugs and single nucleotide polymorphism (SNP) analysis based on whole-genome sequencing (WGS) were performed. The genetic distance and within-host evolution were investigated based on SNPs. In total, 20 treatment failure patients and 74 patients who succeeded in treatment were included. The number of effective drugs for patients who failed treatment was no more than three. Eighteen (90.0%) treatment-failure patients were characterized by a continuous infection of the primary strain, of which 14 patients (77.8%) developed phenotypic or genotypic acquired drug resistance under ineffective treatment. Acquired resistance to amikacin and moxifloxacin (2.0 mg/ml) was detected most frequently, in 5 and 4 patients, respectively. The insufficient number of effective drugs in the combined treatment regimen was the main reason for MDR-TB treatment failure. The study emphasizes the importance of DST for second-line drugs when implementing the second-line drug regimen in MDR-TB patients. For patients with risk factors for MDR-TB, DST of second-line antituberculosis drugs should be performed at initiation of treatment. Second-line drugs should be selected based on the results of DST to avoid acquired resistance. WGS detects low-frequency resistance mutations and heterogeneous resistance with high sensitivity, which is of great significance for guiding clinical treatment and preventing acquired resistance.

Indexed as

AmikacinAntitubercular AgentsChinaDrug Resistance, Multiple, BacterialHumansMicrobial Sensitivity TestsMoxifloxacinMutationMycobacterium tuberculosisRetrospective StudiesTreatment FailureTuberculosis, Multidrug-ResistantWhole Genome SequencingAmikacinAntitubercular AgentsMoxifloxacinadaptive resistanceDNA sequencingdrug resistancedrug resistance evolutiongenome analysisheteroresistancemultidrug resistancemultidrug-resistant tuberculosisMycobacterium tuberculosistreatment outcomewhole-genome sequencingwithin-host evolution

Identifiers

PMID33361124
PMCPMC7763549
OpenAlexW3115618331

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.