Evidence map›Paper›PMID 33357413›Full record

ArticleNeuron2021

Molecular classification of zebrafish retinal ganglion cells links genes to cell types to behavior.

Yvonne Kölsch, Joshua Hahn, Anna Sappington, Manuel Stemmer, António M Fernandes, Thomas O Helmbrecht, Shriya Lele, Salwan Butrus, Eva Laurell, Irene Arnold-Ammer and 3 more

Open access · greenAbstract read
In one paragraph

Article in Neuron, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 71 papers.

0numbers the graph read from it
0cells of the map it votes in
71citing papers in PubMed
4.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

71 citing papers in PubMed, 108 citations in OpenAlex.

  1. Article
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  7. Neural circuits for decision-making based on pineal photoreception in zebrafish.Proceedings of the National Academy of Sciences of the United States of America · 2026
    Article
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  10. Imprecision in Vision: Lessons From Neural Circuits in the Fly.BioEssays : news and reviews in molecular, cellular and developmental biology · 2026
    Review
  11. Article
  12. Article
  13. Article
  14. Review
  15. Article
  16. Article
  17. On analogies in vertebrate and insect visual systems.Nature reviews. Neuroscience · 2025
    Review
  18. Review
  19. Serotonin neuromodulation directs optic nerve regeneration.Development (Cambridge, England) · 2025
    Article
  20. Article

11 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 4 institutions in 2 countries.

Yvonne KölschMax Planck Institute of Neurobiology, Department Genes - Circuits - Behavior, 82152 Martinsried, Germany; Graduate School of Systemic Neurosciences, Ludwig Maximilian University, 82152 Martinsried, Germany.
Joshua HahnDepartment of Chemical and Biomolecular Engineering, UC Berkeley, Berkeley, CA 94720, USA.
Anna SappingtonDepartment of Electrical Engineering and Computer Science, MIT, Cambridge, MA 02139, USA.
Manuel StemmerMax Planck Institute of Neurobiology, Department Genes - Circuits - Behavior, 82152 Martinsried, Germany.
António M FernandesMax Planck Institute of Neurobiology, Department Genes - Circuits - Behavior, 82152 Martinsried, Germany.
Thomas O HelmbrechtMax Planck Institute of Neurobiology, Department Genes - Circuits - Behavior, 82152 Martinsried, Germany.
Shriya LeleMax Planck Institute of Neurobiology, Department Genes - Circuits - Behavior, 82152 Martinsried, Germany.
Salwan ButrusDepartment of Chemical and Biomolecular Engineering, UC Berkeley, Berkeley, CA 94720, USA.
Eva LaurellMax Planck Institute of Neurobiology, Department Genes - Circuits - Behavior, 82152 Martinsried, Germany.
Irene Arnold-AmmerMax Planck Institute of Neurobiology, Department Genes - Circuits - Behavior, 82152 Martinsried, Germany.
Karthik ShekharDepartment of Chemical and Biomolecular Engineering, UC Berkeley, Berkeley, CA 94720, USA; Helen Wills Neuroscience Institute, California Institute for Quantitative Biosciences, QB3, Center for Computational Biology, UC Berkeley, Berkeley, CA 94720, USA. Electronic address: kshekhar@berkeley.edu.
Joshua R SanesCenter for Brain Science and Department of Molecular and Cell Biology, Harvard University, Cambridge, MA 02138, USA. Electronic address: sanesj@mcb.harvard.edu.
Herwig BaierMax Planck Institute of Neurobiology, Department Genes - Circuits - Behavior, 82152 Martinsried, Germany. Electronic address: hbaier@neuro.mpg.de.
Max Planck Institute of Neurobiology · DEUniversity of California, Berkeley · USHarvard University · USQB3 · US

Funding

Synaptic Choices in the Retinotectal SystemR01NS029169 · NINDS · WASHINGTON UNIVERSITY · PI SANES, JOSHUA R · 1991 to 2012
$6.0M
Synaptic Choices in the Retinotectal SystemR37NS029169 · NINDS · HARVARD UNIVERSITY · PI SANES, JOSHUA R · 2013 to 2019
$4.0M
Combinatorial roles of cadherins in retinal circuit assembly.R01EY022073 · NEI · HARVARD UNIVERSITY · PI SANES, JOSHUA R · 2012 to 2020
$3.7M
Uncovering the molecular identity of retinal cell types, and their responses to nerve injury using single-cell transcriptomicsR00EY028625 · NEI · UNIVERSITY OF CALIFORNIA BERKELEY · PI SHEKHAR, KARTHIK · 2020 to 2022
$740k
NEI NIH HHS R00 EY028625NEI NIH HHS R01 EY022073NINDS NIH HHS R01 NS029169NINDS NIH HHS R37 NS029169
6 · The paper itself

Abstract

Retinal ganglion cells (RGCs) form an array of feature detectors, which convey visual information to central brain regions. Characterizing RGC diversity is required to understand the logic of the underlying functional segregation. Using single-cell transcriptomics, we systematically classified RGCs in adult and larval zebrafish, thereby identifying marker genes for >30 mature types and several developmental intermediates. We used this dataset to engineer transgenic driver lines, enabling specific experimental access to a subset of RGC types. Expression of one or few transcription factors often predicts dendrite morphologies and axonal projections to specific tectal layers and extratectal targets. In vivo calcium imaging revealed that molecularly defined RGCs exhibit specific functional tuning. Finally, chemogenetic ablation of eomesa

Indexed as

AnimalsAnimals, Genetically ModifiedFemaleGene Expression Regulation, DevelopmentalLocomotionMalePhotic StimulationRetinal Ganglion CellsZebrafishbehaviorcell atlaseomesgenetic markersgenome engineeringipRGCsphysiologysingle-cell transcriptomicsvisual pathways

Identifiers

PMID33357413
PMCPMC7897282
OpenAlexW3116601342

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.