Evidence map›Paper›PMID 33348573›Full record

ArticleCancers2020

LncRNA-mRNA Co-Expression Analysis Identifies AL133346.1/CCN2 as Biomarkers in Pediatric B-Cell Acute Lymphoblastic Leukemia.

Marta Cuadros, Daniel J García, Alvaro Andrades, Alberto M Arenas, Isabel F Coira, Carlos Baliñas-Gavira, Paola Peinado, María I Rodríguez, Juan Carlos Álvarez-Pérez, Francisco Ruiz-Cabello and 3 more

Open access · goldAbstract read
In one paragraph

Article in Cancers, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
1.1field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 16 citations in OpenAlex.

  1. Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

13 authors at 3 institutions in 1 country.

Marta CuadrosDepartment of Biochemistry and Molecular Biology III and Immunology, University of Granada, Av. de la Investigación 11, 18016 Granada, Spain.
Daniel J GarcíaDepartment of Biochemistry and Molecular Biology III and Immunology, University of Granada, Av. de la Investigación 11, 18016 Granada, Spain.ORCID 0000-0001-5611-534X
Alvaro AndradesGENYO, Centre for Genomics and Oncological Research, Pfizer/University of Granada/Andalusian Regional Government, Av. de la Ilustración 114, 18016 Granada, Spain.ORCID 0000-0001-9042-8964
Alberto M ArenasGENYO, Centre for Genomics and Oncological Research, Pfizer/University of Granada/Andalusian Regional Government, Av. de la Ilustración 114, 18016 Granada, Spain.ORCID 0000-0002-5995-2968
Isabel F CoiraGENYO, Centre for Genomics and Oncological Research, Pfizer/University of Granada/Andalusian Regional Government, Av. de la Ilustración 114, 18016 Granada, Spain.ORCID 0000-0003-3368-4691
Carlos Baliñas-GaviraGENYO, Centre for Genomics and Oncological Research, Pfizer/University of Granada/Andalusian Regional Government, Av. de la Ilustración 114, 18016 Granada, Spain.
Paola PeinadoGENYO, Centre for Genomics and Oncological Research, Pfizer/University of Granada/Andalusian Regional Government, Av. de la Ilustración 114, 18016 Granada, Spain.
María I RodríguezDepartment of Biochemistry and Molecular Biology III and Immunology, University of Granada, Av. de la Investigación 11, 18016 Granada, Spain.
Juan Carlos Álvarez-PérezGENYO, Centre for Genomics and Oncological Research, Pfizer/University of Granada/Andalusian Regional Government, Av. de la Ilustración 114, 18016 Granada, Spain.ORCID 0000-0001-6396-311X
Francisco Ruiz-CabelloDepartment of Biochemistry and Molecular Biology III and Immunology, University of Granada, Av. de la Investigación 11, 18016 Granada, Spain.ORCID 0000-0002-2247-3293
Mireia CamósHematology Laboratory, Institut de Recerca Hospital Sant Joan de Déu, 08950 Barcelona, Spain.
Antonio Jiménez-VelascoHematology Laboratory, Universitary Regional Hospital, Av. de Carlos Haya, 29010 Málaga, Spain.
Pedro P MedinaGENYO, Centre for Genomics and Oncological Research, Pfizer/University of Granada/Andalusian Regional Government, Av. de la Ilustración 114, 18016 Granada, Spain.ORCID 0000-0002-7834-7093
Universidad de Granada · ESHospital Regional Universitario de Málaga · ESHospital Sant Joan de Déu Barcelona · ES

Funding

Asociación Española Contra el Cáncer (AECC) Foundation LabAECC-2018Aula de Investigación sobre la Leucemia infantil: Héroes contra la Leucemia Aula2020Consejería de Salud de la Junta de Andalucía Pl-0245-2017; CS2016-3Fundación Benéfica Anticáncer Santa Cándida y San Francisco Javier Predoctoral FellowshipLa Caixa Foundation Fellowship LCF/BQ/DE15/10360019Marie Sklodowska Curie Actions Postdoctoral Fellowship H2020-MSCA-IF-2018Programa Operativo FEDER 2018 B-CTS-126-UGR18Spanish Ministry of Economy and Business SAF2015-67919-RSpanish Ministry of Education, Culture and Sports FPU Felowship FPU17/00067; FPU17/01258
6 · The paper itself

Abstract

Pediatric acute B-cell lymphoblastic leukemia (B-ALL) constitutes a heterogeneous and aggressive neoplasia in which new targeted therapies are required. Long non-coding RNAs have recently emerged as promising disease-specific biomarkers for the clinic. Here, we identified pediatric B-ALL-specific lncRNAs and associated mRNAs by comparing the transcriptomic signatures of tumoral and non-tumoral samples. We identified 48 lncRNAs that were differentially expressed between pediatric B-ALL and healthy bone marrow samples. The most relevant lncRNA/mRNA pair was AL133346.1/CCN2 (previously known as RP11-69I8.3/CTGF), whose expression was positively correlated and increased in B-ALL samples. Their differential expression pattern and their strong correlation were validated in external B-ALL datasets (Therapeutically Applicable Research to Generate Effective Treatments, Cancer Cell Line Encyclopedia). Survival curve analysis demonstrated that patients with "high" expression levels of CCN2 had higher overall survival than those with "low" levels (

Indexed as

AL133346.1biomarkerCCN2CTGFlncRNA expressionpediatric B-ALL

Identifiers

PMID33348573
PMCPMC7765782
OpenAlexW3111902559

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.