Evidence map›Paper›PMID 33347497›Full record

ArticlePloS one2020

Gene expression profiles of esophageal squamous cell cancers in Hodgkin lymphoma survivors versus sporadic cases.

Berbel L M Ykema, Sanne J M Hoefnagel, Lisanne S Rigter, Liudmila L Kodach, Gerrit A Meijer, Flora E van Leeuwen, Hina N Khan, Petur Snaebjornsson, Berthe M P Aleman, Annegien Broeks and 6 more

Open access · goldAbstract readComparative Study
In one paragraph

Article in PloS one, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.4field-weighted citation impact, top 34% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 2 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 2 countries.

Berbel L M YkemaDepartment of Gastroenterology and Hepatology, Netherlands Cancer Institute, Amsterdam, The Netherlands.ORCID 0000-0002-0314-7986
Sanne J M HoefnagelDepartment of Gastroenterology and Hepatology, Amsterdam UMC, Amsterdam, The Netherlands.
Lisanne S RigterDepartment of Gastroenterology and Hepatology, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Liudmila L KodachDepartment of Pathology, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Gerrit A MeijerDepartment of Pathology, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Flora E van LeeuwenDepartment of Epidemiology, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Hina N KhanCenter for Experimental and Molecular Medicine, Amsterdam UMC, Amsterdam, The Netherlands.
Petur SnaebjornssonDepartment of Pathology, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Berthe M P AlemanDepartment of Radiation Oncology, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Annegien BroeksCore Facility Molecular Pathology and Biobanking, Division of Molecular Pathology, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Sybren L MeijerDepartment of Pathology, Amsterdam UMC, Amsterdam, The Netherlands.
Kenneth K WangDivision of Gastroenterology and Hepatology, Mayo Clinic, Rochester, Minnesota, United States of America.
Beatriz CarvalhoDepartment of Pathology, Netherlands Cancer Institute, Amsterdam, The Netherlands.
Kausilia K KrishnadathDepartment of Gastroenterology and Hepatology, Amsterdam UMC, Amsterdam, The Netherlands.
Monique E van LeerdamDepartment of Gastroenterology and Hepatology, Netherlands Cancer Institute, Amsterdam, The Netherlands.
GIOCA-OES
The Netherlands Cancer Institute · NLAmsterdam University Medical Centers · NLLeiden University Medical Center · NLMayo Clinic · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Hodgkin lymphoma (HL) survivors are at increased risk of developing second primary esophageal squamous cell cancer (ESCC). We aimed to gain insight in the driving events of ESCC in HL survivors (hESCC) by using RNA sequencing and NanoString profiling. Objectives were to investigate differences in RNA signaling between hESCC and sporadic ESCC (sESCC), and to look for early malignant changes in non-neoplastic esophageal tissue of HL survivors (hNN-tissue). We analyzed material of 26 hESCC cases, identified via the Dutch pathology registry (PALGA) and 17 sESCC cases from one academic institute and RNA sequencing data of 44 sESCC cases from TCGA. Gene expression profiles for the NanoString panel PanCancer IO 360 were obtained from 16/26 hESCC and four hNN-tissue, while non-neoplastic squamous tissue of four sporadic cases (sNN-tissue) served as reference profile. Hierarchical clustering, differential expression and pathway analyses were performed. Overall, the molecular profiles of hESCC and sESCC were similar. There was increased immune, HMGB1 and ILK signaling compared to sNN-tissue. The profiles of hNN-tissue were distinct from sNN-tissue, indicating early field effects in the esophagus of HL survivors. The BRCA1 pathway was upregulated in hESCC tissue, compared to hNN tissue. Analysis of expression profiles reveals overlap between hESCC and sESCC, and differences between hESCC and its surrounding hNN-tissue. Further research is required to validate our results and to investigate whether the changes observed in hNN-tissue are already detectable before development of hESCC. In the future, our findings could be used to improve hESCC patient management.

Indexed as

Cancer SurvivorsTranscriptomeAdultAgedAged, 80 and overCarcinoma, Squamous CellEsophageal NeoplasmsFemaleGene Expression Regulation, NeoplasticHodgkin DiseaseHumansMaleMiddle AgedSignal TransductionYoung Adult

Identifiers

PMID33347497
PMCPMC7751872
OpenAlexW3117554932

What OpenQuestion holds

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.