Evidence map›Paper›PMID 33346941›Full record

ArticleThe EMBO journal2021

A stress-induced tyrosine-tRNA depletion response mediates codon-based translational repression and growth suppression.

Doowon Huh, Maria C Passarelli, Jenny Gao, Shahnoza N Dusmatova, Clara Goin, Lisa Fish, Alexandra M Pinzaru, Henrik Molina, Zhiji Ren, Elizabeth A McMillan and 3 more

Open access · bronzeAbstract read
In one paragraph

Article in The EMBO journal, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 30 papers.

0numbers the graph read from it
0cells of the map it votes in
30citing papers in PubMed
2.0field-weighted citation impact, top 13% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

30 citing papers in PubMed, 46 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Emerging roles of transfer RNA fragments in the CNS.Brain : a journal of neurology · 2025
    Review
  5. Article
  6. Article
  7. Article
  8. Review
  9. Stress response regulation of mRNA translation: Implications for antioxidant enzyme expression in cancer.Proceedings of the National Academy of Sciences of the United States of America · 2024
    Review
  10. Review
  11. Transfer RNA acetylation regulates in vivo mammalian stress signaling.bioRxiv : the preprint server for biology · 2024
    Article
  12. Article
  13. Article
  14. Roles and regulation of tRNA-derived small RNAs in animals.Nature reviews. Molecular cell biology · 2024
    Review
  15. Review
  16. Review
  17. Review
  18. Emerging roles of tRNA-derived small RNAs in cancer biology.Experimental & molecular medicine · 2023
    Review
  19. Article
  20. Article
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

13 authors at 2 institutions in 1 country.

Doowon HuhLaboratory of Systems Cancer Biology, The Rockefeller University, New York, NY, USA.ORCID 0000-0003-2722-0217
Maria C PassarelliLaboratory of Systems Cancer Biology, The Rockefeller University, New York, NY, USA.ORCID 0000-0002-5749-5425
Jenny GaoLaboratory of Systems Cancer Biology, The Rockefeller University, New York, NY, USA.
Shahnoza N DusmatovaLaboratory of Systems Cancer Biology, The Rockefeller University, New York, NY, USA.
Clara GoinLaboratory of Systems Cancer Biology, The Rockefeller University, New York, NY, USA.ORCID 0000-0002-1612-1961
Lisa FishDepartment of Biochemistry & Biophysics, University of California, San Francisco, San Francisco, CA, USA.
Alexandra M PinzaruLaboratory of Systems Cancer Biology, The Rockefeller University, New York, NY, USA.ORCID 0000-0003-0737-9503
Henrik MolinaProteome Resource Center, The Rockefeller University, New York, NY, USA.
Zhiji RenLaboratory of Systems Cancer Biology, The Rockefeller University, New York, NY, USA.
Elizabeth A McMillanLaboratory of Systems Cancer Biology, The Rockefeller University, New York, NY, USA.ORCID 0000-0001-9891-2734
Hosseinali AsgharianDepartment of Biochemistry & Biophysics, University of California, San Francisco, San Francisco, CA, USA.
Hani GoodarziDepartment of Biochemistry & Biophysics, University of California, San Francisco, San Francisco, CA, USA.
Sohail F TavazoieLaboratory of Systems Cancer Biology, The Rockefeller University, New York, NY, USA.ORCID 0000-0002-4966-9018
Rockefeller University · USUniversity of California, San Francisco · US

Funding

Weill Cornell/Rockefeller/Sloan-Kettering MST ProgramT32GM007739 · NIGMS · WEILL MEDICAL COLL OF CORNELL UNIV · PI HSU, KATHARINE C · 1985 to 2023
$51.1M
Mechanisms of Cell Regulation and TransformationT32CA009673 · NCI · ROCKEFELLER UNIVERSITY · PI KAPOOR, TARUN M. · 1991 to 2018
$7.0M
An antisense RNA-mediated regulatory program that drives cancer metastasisR01CA240984 · NCI · UNIVERSITY OF CALIFORNIA, SAN FRANCISCO · PI GOODARZI, HANI · 2019 to 2023
$2.5M
Molecular Mechanisms underlying tRNA-fragment regulation of cancerR01CA215491 · NCI · ROCKEFELLER UNIVERSITY · PI TAVAZOIE, SOHAIL F. · 2017 to 2021
$2.3M
Characterizing the Role of Leucyl Aminoacyl tRNA Synthetase (LARS) in Breast Cancer MetastasisF30CA247026 · NCI · WEILL MEDICAL COLL OF CORNELL UNIV · PI PASSARELLI, MARIA CHRISTINA · 2020 to 2023
$191k
Breast Cancer Research Foundation (BCRF)DOD Collaborative Scholars and Innovators Award W81XWH-12-1-0301Howard Hughes Medical Institute (HHMI)NCI NIH HHS F30 CA247026NCI NIH HHS R01 CA215491NCI NIH HHS R01 CA240984NCI NIH HHS T32 CA009673NIGMS NIH HHS T32 GM007739Pershing Square Sohn Cancer Research Alliance (PSSCRA)Reem-Kayden Award
6 · The paper itself

Abstract

Eukaryotic transfer RNAs can become selectively fragmented upon various stresses, generating tRNA-derived small RNA fragments. Such fragmentation has been reported to impact a small fraction of the tRNA pool and thus presumed to not directly impact translation. We report that oxidative stress can rapidly generate tyrosine-tRNA

Indexed as

AnimalsCaenorhabditis elegansCell LineCell ProliferationCodonHEK293 CellsHumansOxidative StressProtein BiosynthesisRNA, TransferTyrosineUbiquitin-Specific ProteasesCodonRNA, TransferTyrosineUbiquitin-Specific ProteaseshnRNPA1oxidative stresstranslationtRNAtRNA fragments

Identifiers

PMID33346941
PMCPMC7809793
OpenAlexW3100284702

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.