Evidence map›Paper›PMID 33346897›Full record

ArticlePlant molecular biology2021

Multiplex CRISPR-Cas9 mutagenesis of the phytochrome gene family in Physcomitrium (Physcomitrella) patens.

Silvia Trogu, Anna Lena Ermert, Fabian Stahl, Fabien Nogué, Tanja Gans, Jon Hughes

Open access · hybridAbstract read
In one paragraph

Article in Plant molecular biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Molecular biology of mosses.Plant molecular biology · 2021
    Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 2 institutions in 2 countries.

Silvia TroguInstitute for Plant Physiology, Justus Liebig University, Senckenbergstrasse 3, 35390, Giessen, Germany.ORCID http://orcid.org/0000-0003-0252-2550
Anna Lena ErmertInstitute for Plant Physiology, Justus Liebig University, Senckenbergstrasse 3, 35390, Giessen, Germany.
Fabian StahlInstitute for Plant Physiology, Justus Liebig University, Senckenbergstrasse 3, 35390, Giessen, Germany.
Fabien NoguéInstitut Jean-Pierre Bourgin, INRAE, AgroParisTech, Université Paris-Saclay, 78000, Versailles, France.ORCID http://orcid.org/0000-0003-0619-4638
Tanja GansInstitute for Plant Physiology, Justus Liebig University, Senckenbergstrasse 3, 35390, Giessen, Germany.
Jon HughesInstitute for Plant Physiology, Justus Liebig University, Senckenbergstrasse 3, 35390, Giessen, Germany. jon.hughes@uni-giessen.de.ORCID http://orcid.org/0000-0001-6070-004X
Justus-Liebig-Universität Gießen · DEAgroParisTech · FR

Funding

Agence Nationale de la Recherche ANR11-BTBR-0001-GENIUSDeutsche Forschungsgemeinschaft HU702/5
6 · The paper itself

Abstract

key messageWe mutated all seven Physcomitrium (Physcomitrella) patens phytochrome genes using highly-efficient CRISPR-Cas9 procedures. We thereby identified phy5a as the phytochrome primarily responsible for inhibiting gravitropism, proving the utility of the mutant library. The CRISPR-Cas9 system is a powerful tool for genome editing. Here we report highly-efficient multiplex CRISPR-Cas9 editing of the seven-member phytochrome gene family in the model bryophyte Physcomitrium (Physcomitrella) patens. Based on the co-delivery of an improved Cas9 plasmid with multiple sgRNA plasmids and an efficient screening procedure to identify high-order multiple mutants prior to sequencing, we demonstrate successful targeting of all seven PHY genes in a single transfection. We investigated further aspects of the CRISPR methodology in Physcomitrella, including the significance of spacing between paired sgRNA targets and the efficacy of NHEJ and HDR in repairing the chromosome when excising a complete locus. As proof-of-principle, we show that the septuple phy

Indexed as

CRISPR-Cas SystemsMultigene FamilyMutagenesisBryopsidaGene EditingGravitropismLightMutationPhenotypePhytochromePhytochromeCRISPR-Cas9GravitropismHomologous recombinationLower plantsMultiplex gene editingPhytochrome

Identifiers

PMID33346897
PMCPMC8648701
OpenAlexW3115273573

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.