Evidence map›Paper›PMID 33343993›Full record

ArticleJournal of pathology informatics2020

Comparing Deep Learning and Immunohistochemistry in Determining the Site of Origin for Well-Differentiated Neuroendocrine Tumors.

Jordan Redemann, Fred A Schultz, Cathy Martinez, Michael Harrell, Douglas P Clark, David R Martin, Joshua A Hanson

Open access · goldAbstract read
In one paragraph

Article in Journal of pathology informatics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
0.6field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed, 9 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 1 institution in 1 country.

Jordan RedemannDepartment of Pathology, University of New Mexico School of Medicine, Albuquerque, NM, USA.
Fred A SchultzDepartment of Pathology, University of New Mexico School of Medicine, Albuquerque, NM, USA.
Cathy MartinezDepartment of Pathology, University of New Mexico School of Medicine, Albuquerque, NM, USA.
Michael HarrellDepartment of Pathology, University of New Mexico School of Medicine, Albuquerque, NM, USA.
Douglas P ClarkDepartment of Pathology, University of New Mexico School of Medicine, Albuquerque, NM, USA.
David R MartinDepartment of Pathology, University of New Mexico School of Medicine, Albuquerque, NM, USA.
Joshua A HansonDepartment of Pathology, University of New Mexico School of Medicine, Albuquerque, NM, USA.
University of New Mexico · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

backgroundDetermining the site of origin for metastatic well-differentiated neuroendocrine tumors (WDNETs) is challenging, and immunohistochemical (IHC) profiles do not always lead to a definitive diagnosis. We sought to determine if a deep-learning convolutional neural network (CNN) could improve upon established IHC profiles in predicting the site of origin in a cohort of WDNETs from the common primary sites. MATERIALS AND

methodsHematoxylin and eosin (H&E)-stained tissue microarrays (TMAs) were created using 215 WDNETs arising from the known primary sites. A CNN trained and tested on 60% (

resultsWhen all cases were considered, the CNN correctly identified the site of origin at a lower rate compared to IHC (72% vs. 82%, respectively). Of the 85 cases in the CNN test set, 66 had sufficient TMA material for IHC stains, thus 66 cases were available for a direct case-by-case comparison of IHC versus CNN. The CNN correctly identified 70% of these cases, while IHC correctly identified 76%, a finding that was not statistically significant (

conclusionA CNN can identify WDNET site of origin at an accuracy rate close to the current gold standard IHC methods.

Indexed as

Artificial Intelligenceconvolutional neural networkdeep learningneuroendocrine tumor

Identifiers

PMID33343993
PMCPMC7737494
OpenAlexW3091930800

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-SA
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.