Evidence map›Paper›PMID 33340588›Full record

ReviewBiochimica et biophysica acta. General subjects2021

The carboxylation status of osteocalcin has important consequences for its structure and dynamics.

Karan Kapoor, Min Pi, Satoru Kenneth Nishimoto, Leigh Darryl Quarles, Jerome Baudry, Jeremy C Smith

Open access · greenAbstract readReview
In one paragraph

Review in Biochimica et biophysica acta. General subjects, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 18 citations in OpenAlex.

  1. Article
  2. Bone and muscle crosstalk in ageing and disease.Nature reviews. Endocrinology · 2025
    Review
  3. Observational
  4. Article
  5. Roles of osteocalcin in the central nervous system.CNS neuroscience & therapeutics · 2024
    Review
  6. Potential Targeting Mechanisms for Bone-Directed Therapies.International journal of molecular sciences · 2024
    Review
  7. Article
  8. Article
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors at 4 institutions in 1 country.

Karan KapoorCenter for Molecular Biophysics, University of Tennessee/Oak Ridge National Lab, Oak Ridge, TN 37830, United States of America.
Min PiDepartment of Medicine, Microbiology, Immunology and Biochemistry University of Tennessee Health Science Center, 19 S, Manassas, St. Memphis, TN 38163, United States of America.
Satoru Kenneth NishimotoDepartment of Medicine, Microbiology, Immunology and Biochemistry University of Tennessee Health Science Center, 19 S, Manassas, St. Memphis, TN 38163, United States of America.
Leigh Darryl QuarlesDepartment of Medicine, Microbiology, Immunology and Biochemistry University of Tennessee Health Science Center, 19 S, Manassas, St. Memphis, TN 38163, United States of America.
Jerome BaudryDepartment of Biological Sciences, The University of Alabama in Huntsville, Huntsville, AL 35899, United States of America. Electronic address: jerome.baudry@uah.edu.
Jeremy C SmithCenter for Molecular Biophysics, University of Tennessee/Oak Ridge National Lab, Oak Ridge, TN 37830, United States of America; Department of Biochemistry and Cellular and Molecular Biology, University of Tennessee, Knoxville, TN 37996, United States of America. Electronic address: jcsmith@ornl.gov.
University of Tennessee Health Science Center · USOak Ridge National Laboratory · USUniversity of Alabama in Huntsville · USUniversity of Tennessee at Knoxville · US

Funding

Genetic and Environmental Determinants of GPRC6A Regulation of Energy Metabolism Using Genetically Engineered Mice and Systems BiologyR01DK120567 · NIDDK · UNIVERSITY OF TENNESSEE HEALTH SCI CTR · PI LU, LU, PI, MIN · 2020 to 2023
$2.0M
NIDDK NIH HHS R01 DK120567
6 · The paper itself

Abstract

backgroundThe carboxylation status of Osteocalcin (Ocn) not only influences formation and structure in bones but also has important endocrine functions affecting energy metabolism and expenditure. In this study, the role of γ-carboxylation of the glutamate residues in the structure-dynamics-function relationship in Ocn is investigated.

methodsThree forms of Ocn, differentially carboxylated at the Glu-17, 21 and 24 residues, along with a mutated form of Ocn carrying Glu/Ala mutations, are modeled and simulated using molecular dynamics (MD) simulation in the presence of calcium ions.

resultsCharacterization of the global conformational dynamics of Ocn, described in terms of the orientational variations within its 3-helical domain, highlights large structural variations in the non-carboxylated osteocalcin (nOcn). The bi-carboxylated Ocn (bOcn) and tri-carboxylated (tOcn) species, in contrast, display relatively rigid tertiary structures, with the dynamics of most regions strongly correlated. Radial distribution functions calculated for both bOcn and tOcn show long-range ordering of the calcium ion distribution around the carboxylated glutamate (γGlu) residues, likely playing an important role in promoting stability of these Ocns. Additionally, the same calcium ions are observed to coordinate with neighboring γGlu, better shielding their negative charges and in turn stabilizing these systems more than do the singly coordinating calcium ions observed in the case of nOcn. bOcn is also found to exhibit a more helical C-terminal structure, that has been shown to activate its cellular receptor GPRC6A, highlighting the allosteric role of Ocn carboxylation in modulating the stability and binding potential of the active C-terminal.

conclusionsThe carboxylation status of Ocn as well and its calcium coordination appear to have a direct influence on Ocn structure and dynamics, possibly leading to the known differences in Ocn biological function. GENERAL SIGNIFICANCE: Modification of Ocn sequence or its carboxylation state may provide the blueprint for developing high-affinity peptides targeting its cellular receptor GPRC6A, with therapeutic potential for treatment of metabolic disorders.

Indexed as

Amino Acid SequenceAnimalsCalciumCarboxylic AcidsGlutamic AcidHumansMolecular Dynamics SimulationOsteocalcinProtein ConformationProtein StabilityCalciumCarboxylic AcidsGlutamic AcidOsteocalcin

Identifiers

PMID33340588
PMCPMC8843000
OpenAlexW3110699800

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.