Evidence map›Paper›PMID 33340034›Full record

ArticleNature microbiology2021

Responses to acute infection with SARS-CoV-2 in the lungs of rhesus macaques, baboons and marmosets.

Dhiraj Kumar Singh, Bindu Singh, Shashank R Ganatra, Michal Gazi, Journey Cole, Rajesh Thippeshappa, Kendra J Alfson, Elizabeth Clemmons, Olga Gonzalez, Ruby Escobedo and 52 more

Erratum issuedOpen access · bronzeAbstract read
In one paragraph

Article in Nature microbiology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 155 papers, 2 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
155citing papers in PubMed, 2 pooled it
4.2field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

155 citing papers in PubMed, 2 syntheses or guidelines pooled it, 207 citations in OpenAlex.

  1. Pooled it
  2. A Meta-Analysis of Rhesus Macaques (Comparative medicine · 2021
    Pooled it
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95 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

62 authors at 3 institutions in 1 country.

Dhiraj Kumar SinghSouthwest National Primate Research Center, San Antonio, TX, USA.
Bindu SinghSouthwest National Primate Research Center, San Antonio, TX, USA.
Shashank R GanatraSouthwest National Primate Research Center, San Antonio, TX, USA.
Michal GaziTexas Biomedical Research Institute, San Antonio, TX, USA.
Journey ColeSouthwest National Primate Research Center, San Antonio, TX, USA.
Rajesh ThippeshappaSouthwest National Primate Research Center, San Antonio, TX, USA.
Kendra J AlfsonTexas Biomedical Research Institute, San Antonio, TX, USA.
Elizabeth ClemmonsSouthwest National Primate Research Center, San Antonio, TX, USA.
Olga GonzalezSouthwest National Primate Research Center, San Antonio, TX, USA.
Ruby EscobedoSouthwest National Primate Research Center, San Antonio, TX, USA.
Tae-Hyung LeeSouthwest National Primate Research Center, San Antonio, TX, USA.
Ayan ChatterjeeSouthwest National Primate Research Center, San Antonio, TX, USA.
Yenny Goez-GaziTexas Biomedical Research Institute, San Antonio, TX, USA.
Riti SharanSouthwest National Primate Research Center, San Antonio, TX, USA.
Maya GoughSouthwest National Primate Research Center, San Antonio, TX, USA.
Cynthia AlvarezSouthwest National Primate Research Center, San Antonio, TX, USA.
Alyssa BlakleySouthwest National Primate Research Center, San Antonio, TX, USA.
Justin FerdinSouthwest National Primate Research Center, San Antonio, TX, USA.
Carmen BartleySouthwest National Primate Research Center, San Antonio, TX, USA.
Hilary StaplesSouthwest National Primate Research Center, San Antonio, TX, USA.
Laura ParodiSouthwest National Primate Research Center, San Antonio, TX, USA.
Jessica CallerySouthwest National Primate Research Center, San Antonio, TX, USA.
Amanda ManninoSouthwest National Primate Research Center, San Antonio, TX, USA.
Benjamin KlaffkeTexas Biomedical Research Institute, San Antonio, TX, USA.
Priscilla EscarenoTexas Biomedical Research Institute, San Antonio, TX, USA.
Roy N PlattTexas Biomedical Research Institute, San Antonio, TX, USA.ORCID http://orcid.org/0000-0002-9754-5765
Vida HodaraSouthwest National Primate Research Center, San Antonio, TX, USA.ORCID http://orcid.org/0000-0002-6301-2637
Julia ScordoTexas Biomedical Research Institute, San Antonio, TX, USA.
Shalini GautamTexas Biomedical Research Institute, San Antonio, TX, USA.
Andreu G VilanovaTexas Biomedical Research Institute, San Antonio, TX, USA.ORCID http://orcid.org/0000-0002-2385-8718
Angelica Olmo-FontanezTexas Biomedical Research Institute, San Antonio, TX, USA.
Alyssa SchamiTexas Biomedical Research Institute, San Antonio, TX, USA.
Adelekan OyejideRegeneron Pharmaceuticals Inc., Tarrytown, NY, USA.
Dharani K AjithdossRegeneron Pharmaceuticals Inc., Tarrytown, NY, USA.ORCID http://orcid.org/0000-0001-5007-1163
Richard CopinRegeneron Pharmaceuticals Inc., Tarrytown, NY, USA.ORCID http://orcid.org/0000-0001-7717-2183
Alina BaumRegeneron Pharmaceuticals Inc., Tarrytown, NY, USA.
Christos KyratsousRegeneron Pharmaceuticals Inc., Tarrytown, NY, USA.
Xavier AlvarezSouthwest National Primate Research Center, San Antonio, TX, USA.
Mushtaq AhmedWashington University School of Medicine in St Louis, St Louis, MO, USA.
Bruce RosaWashington University School of Medicine in St Louis, St Louis, MO, USA.ORCID http://orcid.org/0000-0002-6820-446X
Anna GoodroeSouthwest National Primate Research Center, San Antonio, TX, USA.
John DuttonSouthwest National Primate Research Center, San Antonio, TX, USA.
Shannan Hall-UrsoneSouthwest National Primate Research Center, San Antonio, TX, USA.
Patrice A FrostSouthwest National Primate Research Center, San Antonio, TX, USA.
Andra K VogesSouthwest National Primate Research Center, San Antonio, TX, USA.
Corinna N RossSouthwest National Primate Research Center, San Antonio, TX, USA.
Ken SayersSouthwest National Primate Research Center, San Antonio, TX, USA.
Christopher ChenSouthwest National Primate Research Center, San Antonio, TX, USA.ORCID http://orcid.org/0000-0003-2726-3989
Cory HallamTexas Biomedical Research Institute, San Antonio, TX, USA.
Shabaana A KhaderWashington University School of Medicine in St Louis, St Louis, MO, USA.
Makedonka MitrevaWashington University School of Medicine in St Louis, St Louis, MO, USA.ORCID http://orcid.org/0000-0001-9572-3436
Timothy J C AndersonTexas Biomedical Research Institute, San Antonio, TX, USA.
Luis Martinez-SobridoTexas Biomedical Research Institute, San Antonio, TX, USA.
Jean L PattersonTexas Biomedical Research Institute, San Antonio, TX, USA.ORCID http://orcid.org/0000-0001-8069-8098
Joanne TurnerTexas Biomedical Research Institute, San Antonio, TX, USA.ORCID http://orcid.org/0000-0002-0840-7484
Jordi B TorrellesTexas Biomedical Research Institute, San Antonio, TX, USA.ORCID http://orcid.org/0000-0001-7702-5941
Edward J DickSouthwest National Primate Research Center, San Antonio, TX, USA.
Kathleen BraskySouthwest National Primate Research Center, San Antonio, TX, USA.
Larry S SchlesingerSouthwest National Primate Research Center, San Antonio, TX, USA.
Luis D GiavedoniSouthwest National Primate Research Center, San Antonio, TX, USA. lgiavedoni@txbiomed.org.
Ricardo CarrionSouthwest National Primate Research Center, San Antonio, TX, USA. rcarrion@txbiomed.org.ORCID http://orcid.org/0000-0001-7046-7683
Deepak KaushalSouthwest National Primate Research Center, San Antonio, TX, USA. dkaushal@txbiomed.org.ORCID http://orcid.org/0000-0003-3521-1257
Texas Biomedical Research Institute · USRegeneron (United States) · USWashington University in St. Louis · US

Funding

The Southwest National Primate Research Center Supplement- Infrastructure improvements of ABSL2 holding areasP51OD011133 · OD · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI Larry S. Schlesinger · 2012 to 2026
$129.7M
Viral Testing CoreU42OD010442 · OD · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI Deepak Kaushal, Kathryn Shelton · 2012 to 2026
$35.6M
New England Primate Research Center Base GrantP51OD011103 · OD · HARVARD MEDICAL SCHOOL · PI FLIER, JEFFREY S · 2012 to 2013
$24.7M
San Antonio OAIC - Research Education Component (REC)P30AG044271 · NIA · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Adam Salmon · 2015 to 2026
$14.1M
TRAINING GRANT ON THE BIOLOGY OF AGINGT32AG021890 · NIA · UNIVERSITY OF TEXAS HLTH SCIENCE CENTER · PI Erzsebet Kokovay, JAMES FLOYD NELSON · 2003 to 2026
$11.4M
The Role of Group 3 Innate Lymphoid cells (ILC3) in TuberculosisR01AI134236 · NIAID · WASHINGTON UNIVERSITY · PI COLONNA, MARCO, KHADER, SHABAANA A. · 2017 to 2021
$4.4M
Significant upgrade and expansion of the Southwest National Primate Research Center Pathology UnitS10OD028732 · OD · TEXAS BIOMEDICAL RESEARCH INSTITUTE · PI KAUSHAL, DEEPAK · 2020 to 2020
$489k
NIAID NIH HHS R01 AI134236NIA NIH HHS P30 AG044271NIA NIH HHS T32 AG021890NIH HHS P51 OD011103NIH HHS P51 OD011133NIH HHS S10 OD028732NIH HHS U42 OD010442U.S. Department of Health & Human Services | NIH | National Institute of Allergy and Infectious Diseases (NIAID) R01AI134236U.S. Department of Health & Human Services | NIH | NIH Office of the Director (OD) P51OD011133
6 · The paper itself

Abstract

Non-human primate models will expedite therapeutics and vaccines for coronavirus disease 2019 (COVID-19) to clinical trials. Here, we compare acute severe acute respiratory syndrome coronavirus 2 (SARS-CoV-2) infection in young and old rhesus macaques, baboons and old marmosets. Macaques had clinical signs of viral infection, mild to moderate pneumonitis and extra-pulmonary pathologies, and both age groups recovered in two weeks. Baboons had prolonged viral RNA shedding and substantially more lung inflammation compared with macaques. Inflammation in bronchoalveolar lavage was increased in old versus young baboons. Using techniques including computed tomography imaging, immunophenotyping, and alveolar/peripheral cytokine response and immunohistochemical analyses, we delineated cellular immune responses to SARS-CoV-2 infection in macaque and baboon lungs, including innate and adaptive immune cells and a prominent type-I interferon response. Macaques developed T-cell memory phenotypes/responses and bystander cytokine production. Old macaques had lower titres of SARS-CoV-2-specific IgG antibody levels compared with young macaques. Acute respiratory distress in macaques and baboons recapitulates the progression of COVID-19 in humans, making them suitable as models to test vaccines and therapies.

Indexed as

Adaptive ImmunityAnimalsAntibodies, ViralBronchoalveolar LavageBronchoalveolar Lavage FluidCallithrixCOVID-19FemaleHumansImmunity, CellularImmunoglobulin GInflammationLungMacaca mulattaMaleMonkey DiseasesAntibodies, ViralImmunoglobulin G

Identifiers

PMID33340034
PMCPMC7890948
OpenAlexW3116593921

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.