Evidence map›Paper›PMID 33339958›Full record

ArticleCommunications biology2020

Submolecular probing of the complement C5a receptor-ligand binding reveals a cooperative two-site binding mechanism.

Andra C Dumitru, R N V Krishna Deepak, Heng Liu, Melanie Koehler, Cheng Zhang, Hao Fan, David Alsteens

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Communications biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
1.0field-weighted citation impact, top 24% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. UltrastrongScience advances · 2025
    Article
  2. Article
  3. Review
  4. Article
  5. Structural biology of complement receptors.Frontiers in immunology · 2023
    Review
  6. Review
  7. Article
  8. Review
4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 3 countries.

Andra C Dumitru *Université catholique de Louvain, Louvain Institute of Biomolecular Science and Technology, 1348, Louvain-la-Neuve, Belgium.
R N V Krishna Deepak *Bioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore.
Heng Liu *Department of Pharmacology and Chemical Biology, School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA.
Melanie KoehlerUniversité catholique de Louvain, Louvain Institute of Biomolecular Science and Technology, 1348, Louvain-la-Neuve, Belgium.ORCID http://orcid.org/0000-0003-3042-1749
Cheng ZhangDepartment of Pharmacology and Chemical Biology, School of Medicine, University of Pittsburgh, Pittsburgh, PA, USA. chengzh@pitt.edu.
Hao FanBioinformatics Institute (BII), Agency for Science, Technology and Research (A*STAR), Singapore, Singapore. fanh@bii.a-star.edu.sg.ORCID http://orcid.org/0000-0003-0199-9752
David AlsteensUniversité catholique de Louvain, Louvain Institute of Biomolecular Science and Technology, 1348, Louvain-la-Neuve, Belgium. david.alsteens@uclouvain.be.ORCID http://orcid.org/0000-0001-9229-113X
UCLouvain · BEAgency for Science, Technology and Research · SGUniversity of Pittsburgh · US

Funding

Structure, pharmacology and signaling of G protein-coupled receptors (GPCRs) in inflammationR35GM128641 · NIGMS · UNIVERSITY OF PITTSBURGH AT PITTSBURGH · PI CHENG ZHANG · 2018 to 2026
$3.5M
NIGMS NIH HHS R35 GM128641
6 · The paper itself

Abstract

A current challenge to produce effective therapeutics is to accurately determine the location of the ligand-biding site and to characterize its properties. So far, the mechanisms underlying the functional activation of cell surface receptors by ligands with a complex binding mechanism remain poorly understood due to a lack of suitable nanoscopic methods to study them in their native environment. Here, we elucidated the ligand-binding mechanism of the human G protein-coupled C5a receptor (C5aR). We discovered for the first time a cooperativity between the two orthosteric binding sites. We found that the N-terminus C5aR serves as a kinetic trap, while the transmembrane domain acts as the functional site and both contributes to the overall high-affinity interaction. In particular, Asp282 plays a key role in ligand binding thermodynamics, as revealed by atomic force microscopy and steered molecular dynamics simulation. Our findings provide a new structural basis for the functional and mechanistic understanding of the GPCR family that binds large macromolecular ligands.

Indexed as

Binding SitesLigandsMolecular Docking SimulationMolecular Dynamics SimulationAmino Acid SequenceCell MembraneDrug DiscoveryKineticsLipid BilayersMicroscopy, Atomic ForcePeptides, CyclicProtein BindingReceptor, Anaphylatoxin C5aStructure-Activity RelationshipThermodynamicsAcPhe(ornithine-Pro-cyclohexylamine-Trp-Arg)LigandsLipid BilayersPeptides, CyclicReceptor, Anaphylatoxin C5a

Identifiers

PMID33339958
PMCPMC7749166
OpenAlexW3114920513

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.