Evidence map›Paper›PMID 33337362›Full record

ArticleJournal of Alzheimer's disease : JAD2021

APOE4 Copy Number-Dependent Proteomic Changes in the Cerebrospinal Fluid.

Miles Berger, Mary Cooter, Alexander S Roesler, Stacey Chung, John Park, Jennifer L Modliszewski, Keith W VanDusen, J Will Thompson, Arthur Moseley, Michael J Devinney and 7 more

Erratum issuedOpen access · greenAbstract read
In one paragraph

Article in Journal of Alzheimer's disease : JAD, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 14 papers.

0numbers the graph read from it
0cells of the map it votes in
14citing papers in PubMed
1.4field-weighted citation impact, top 18% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

14 citing papers in PubMed, 20 citations in OpenAlex.

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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

17 authors at 2 institutions in 1 country.

Miles BergerDepartment of Anesthesiology, Duke University Medical Center, Durham, NC, USA.
Mary CooterDepartment of Anesthesiology, Duke University Medical Center, Durham, NC, USA.
Alexander S RoeslerDepartment of Anesthesiology, Duke University Medical Center, Durham, NC, USA.
Stacey ChungDepartment of Anesthesiology, Duke University Medical Center, Durham, NC, USA.
John ParkDepartment of Anesthesiology, Duke University Medical Center, Durham, NC, USA.
Jennifer L ModliszewskiDuke Center for Genomic and Computational Biology, Duke University, Durham, NC, USA.
Keith W VanDusenDepartment of Anesthesiology, Duke University Medical Center, Durham, NC, USA.
J Will ThompsonDuke Center for Genomic and Computational Biology, Duke University, Durham, NC, USA.
Arthur MoseleyDuke Center for Genomic and Computational Biology, Duke University, Durham, NC, USA.
Michael J DevinneyDepartment of Anesthesiology, Duke University Medical Center, Durham, NC, USA.
Shayan SmaniDepartment of Anesthesiology, Duke University Medical Center, Durham, NC, USA.
Ashley HallDepartment of Anesthesiology, Duke University Medical Center, Durham, NC, USA.
Victor CaiDepartment of Anesthesiology, Duke University Medical Center, Durham, NC, USA.
Jeffrey N BrowndykeCenter for Cognitive Neuroscience, Duke Institute for Brain Sciences, Durham, NC, USA.
Michael W LutzDepartment of Neurology, Duke University Medical Center, Durham, NC, USA.
David L CorcoranDuke Center for Genomic and Computational Biology, Duke University, Durham, NC, USA.
and Alzheimer’s Disease Neuroimaging Initiative
Duke University · USDuke Medical Center · US

Funding

Alzheimer's Disease Neuroimaging Initiative - SupplementU01AG024904 · NIA · NORTHERN CALIFORNIA INSTITUTE RES &EDUC · PI WEINER, MICHAEL W · 2004 to 2015
$121.0M
Resource Core 3 - Metabolomics CoreP30AG028716 · NIA · DUKE UNIVERSITY · PI Sarah B. Peskoe · 2006 to 2026
$24.6M
Physical Resiliencies: Indicators and Mechanisms in the Elderly CollaborativeUH2AG056925 · NIA · DUKE UNIVERSITY · PI COLON-EMERIC, CATHLEEN S, WHITSON, HEATHER E. · 2017 to 2018
$2.0M
Neuro-inflammation in Postoperative Cognitive Dysfunction: CSF and fMRI StudiesK76AG057022 · NIA · DUKE UNIVERSITY · PI BERGER, MILES · 2017 to 2022
$1.4M
CIHRNIA NIH HHS K76 AG057022NIA NIH HHS P30 AG028716NIA NIH HHS U01 AG024904NIA NIH HHS UH2 AG056925
6 · The paper itself

Abstract

backgroundAPOE4 has been hypothesized to increase Alzheimer's disease risk by increasing neuroinflammation, though the specific neuroinflammatory pathways involved are unclear.

objectiveCharacterize cerebrospinal fluid (CSF) proteomic changes related to APOE4 copy number.

methodsWe analyzed targeted proteomic data from ADNI CSF samples using a linear regression model adjusting for age, sex, and APOE4 copy number, and additional linear models also adjusting for AD clinical status or for CSF Aβ, tau, or p-tau levels. False discovery rate was used to correct for multiple comparisons correction.

resultsIncreasing APOE4 copy number was associated with a significant decrease in a CRP peptide level across all five models (q < 0.05 for each), and with significant increases in ALDOA, CH3L1 (YKL-40), and FABPH peptide levels (q < 0.05 for each) except when controlling for AD clinical status or neurodegeneration biomarkers (i.e., CSF tau or p-tau). In all models except the one controlling for CSF Aβ levels, though not statistically significant, there was a consistent inverse direction of association between APOE4 copy number and the levels of all 24 peptides from all 8 different complement proteins measured. The odds of this happening by chance for 24 unrelated peptides would be less than 1 in 16 million.

conclusionIncreasing APOE4 copy number was associated with decreased CSF CRP levels across all models, and increased CSF ALDOA, CH3L1, and FABH levels when controlling for CSF Aβ levels. Increased APOE4 copy number may also be associated with decreased CSF complement pathway protein levels, a hypothesis for investigation in future studies.

Indexed as

Alzheimer DiseaseDNA Copy Number VariationsProteomicsAgedApolipoprotein E4BiomarkersChitinase-3-Like Protein 1FemaleFructose-Bisphosphate AldolaseHumansMaleReceptors, ImmunologicALDOA protein, humanApolipoprotein E4BiomarkersCHI3L1 protein, humanChitinase-3-Like Protein 1CRP protein, humanFructose-Bisphosphate AldolaseReceptors, ImmunologicAlzheimer diseaseapolipoprotein E4biomarkercerebrospinal fluidcomplement activationC-reactive proteinmass spectrometryneurogenic inflammation

Identifiers

PMID33337362
PMCPMC7902966
OpenAlexW3111401255

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.