Evidence map›Paper›PMID 33335127›Full record

ArticleScientific reports2020

Expression of transgenes enriched in rare codons is enhanced by the MAPK pathway.

Jackson Peterson, Siqi Li, Erin Kaltenbrun, Ozgun Erdogan, Christopher M Counter

Open access · goldAbstract read
In one paragraph

Article in Scientific reports, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.9field-weighted citation impact, top 26% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Article
  4. Article
  5. Article
  6. Article
  7. Article
  8. Review
  9. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Jackson PetersonDepartment of Pharmacology and Cancer Biology, Duke University Medical Center, Durham, NC, 27710, UK.
Siqi LiDepartment of Pharmacology and Cancer Biology, Duke University Medical Center, Durham, NC, 27710, UK.
Erin KaltenbrunDepartment of Pharmacology and Cancer Biology, Duke University Medical Center, Durham, NC, 27710, UK.
Ozgun ErdoganDepartment of Pharmacology and Cancer Biology, Duke University Medical Center, Durham, NC, 27710, UK.
Christopher M CounterDepartment of Pharmacology and Cancer Biology, Duke University Medical Center, Durham, NC, 27710, UK. count004@mc.duke.edu.
Duke Medical Center · USDuke University Hospital · US

Funding

Project 4: The role of codon bias in RAS tumorigenesisP01CA203657 · NCI · UNIV OF NORTH CAROLINA CHAPEL HILL · PI COUNTER, CHRISTOPHER M · 2016 to 2020
$7.9M
CANCER BIOLOGY TRAINING GRANTT32CA059365 · NCI · DUKE UNIVERSITY · PI WANG, XIAO-FAN · 1993 to 2014
$4.4M
RalA signal transductionR01CA094184 · NCI · DUKE UNIVERSITY · PI COUNTER, CHRISTOPHER M · 2002 to 2018
$4.1M
The role of KRAS codon bias in tumorigenesisF32CA192715 · NCI · DUKE UNIVERSITY · PI KALTENBRUN, ERIN · 2016 to 2017
$84k
NCI NIH HHS F32 CA192715NCI NIH HHS F32CA192715NCI NIH HHS P01 CA203657NCI NIH HHS R01 CA094184NCI NIH HHS R01CA94184NCI NIH HHS T32 CA059365
6 · The paper itself

Abstract

The ability to translate three nucleotide sequences, or codons, into amino acids to form proteins is conserved across all organisms. All but two amino acids have multiple codons, and the frequency that such synonymous codons occur in genomes ranges from rare to common. Transcripts enriched in rare codons are typically associated with poor translation, but in certain settings can be robustly expressed, suggestive of codon-dependent regulation. Given this, we screened a gain-of-function library for human genes that increase the expression of a GFP

Indexed as

CodonGene ExpressionMAP Kinase Signaling SystemTransgenesGain of Function MutationGenes, ReporterHumansImmunophenotypingMitogen-Activated Protein KinasesCodonMitogen-Activated Protein Kinases

Identifiers

PMID33335127
PMCPMC7746698
OpenAlexW3111299360

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.