Evidence map›Paper›PMID 33335016›Full record

ArticleScience (New York, N.Y.)2021

Pre-T cell receptors topologically sample self-ligands during thymocyte β-selection.

Xiaolong Li, Réka Mizsei, Kemin Tan, Robert J Mallis, Jonathan S Duke-Cohan, Aoi Akitsu, Paul W Tetteh, Abhinav Dubey, Wonmuk Hwang, Gerhard Wagner and 4 more

Open access · bronzeAbstract read
In one paragraph

Article in Science (New York, N.Y.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 20 papers.

0numbers the graph read from it
0cells of the map it votes in
20citing papers in PubMed
2.7field-weighted citation impact, top 9% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

20 citing papers in PubMed, 41 citations in OpenAlex.

  1. Article
  2. Atomistic TCR-ligand interactions instruct memory T-cell differentiation.bioRxiv : the preprint server for biology · 2025
    Article
  3. Review
  4. Review
  5. Article
  6. Article
  7. Article
  8. Article
  9. Harnessing αβ T cell receptor mechanobiology to achieve the promise of immuno-oncology.Proceedings of the National Academy of Sciences of the United States of America · 2023
    Review
  10. Article
  11. Article
  12. Article
  13. Notch Partners in the Long Journey of T-ALL Pathogenesis.International journal of molecular sciences · 2023
    Review
  14. Article
  15. A Beginner's Guide to T Cell Development.Methods in molecular biology (Clifton, N.J.) · 2023
    Review
  16. Article
  17. Review
  18. A set point in the selection of the αβTCR T cell repertoire imposed by pre-TCR signaling strength.Proceedings of the National Academy of Sciences of the United States of America · 2022
    Article
  19. Article
  20. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 5 institutions in 2 countries.

Xiaolong LiLaboratory of Immunobiology, Dana-Farber Cancer Institute, Boston, MA, USA. jwang@crystal.harvard.edu ellis_reinherz@dfci.harvard.edu.ORCID https://orcid.org/0000-0001-6549-4089
Réka MizseiLaboratory of Immunobiology, Dana-Farber Cancer Institute, Boston, MA, USA. jwang@crystal.harvard.edu ellis_reinherz@dfci.harvard.edu.ORCID https://orcid.org/0000-0003-4519-4307
Kemin TanStructural Biology Center, X-ray Science Division, Advanced Photon Source, Argonne National Laboratory, Lemont, IL, USA.ORCID https://orcid.org/0000-0002-4003-7903
Robert J MallisLaboratory of Immunobiology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID https://orcid.org/0000-0002-2087-9468
Jonathan S Duke-CohanLaboratory of Immunobiology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID https://orcid.org/0000-0002-9478-9609
Aoi AkitsuLaboratory of Immunobiology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID https://orcid.org/0000-0001-7672-9664
Paul W TettehLaboratory of Immunobiology, Dana-Farber Cancer Institute, Boston, MA, USA.ORCID https://orcid.org/0000-0003-4381-498X
Abhinav DubeyDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA.ORCID https://orcid.org/0000-0002-2392-8050
Wonmuk HwangDepartment of Biomedical Engineering, Texas A&M University, College Station, TX, USA.ORCID https://orcid.org/0000-0001-7514-3186
Gerhard WagnerDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA.ORCID https://orcid.org/0000-0002-2063-4401
Matthew J LangDepartment of Chemical and Biomolecular Engineering, Vanderbilt University, Nashville, TN, USA.ORCID https://orcid.org/0000-0002-8198-144X
Haribabu ArthanariDepartment of Biological Chemistry and Molecular Pharmacology, Harvard Medical School, Boston, MA, USA.ORCID https://orcid.org/0000-0002-7281-1289
Jia-Huai WangLaboratory of Immunobiology, Dana-Farber Cancer Institute, Boston, MA, USA. jwang@crystal.harvard.edu ellis_reinherz@dfci.harvard.edu.ORCID https://orcid.org/0000-0003-3478-829X
Ellis L ReinherzLaboratory of Immunobiology, Dana-Farber Cancer Institute, Boston, MA, USA. jwang@crystal.harvard.edu ellis_reinherz@dfci.harvard.edu.ORCID https://orcid.org/0000-0003-1048-5526
Harvard University · USDana-Farber Cancer Institute · USArgonne National Laboratory · USKorea Institute for Advanced Study · KRVanderbilt University · US

Funding

T CELL SPECIFIC TRANSCRIPTION COMPLEXESP01GM047467 · NIGMS · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WAGNER, GERHARD · 1992 to 2017
$28.6M
Protein Production CoreP01AI143565 · NIAID · DANA-FARBER CANCER INST · PI ELLIS L REINHERZ · 2020 to 2026
$19.9M
OverallP41EB002026 · NIBIB · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GRIFFIN, ROBERT GUY · 2003 to 2018
$17.9M
TRANSFUSION BIOLOGY AND MEDICINET32HL066987 · NHLBI · CHILDREN'S HOSPITAL BOSTON · PI JOHN P MANIS · 2001 to 2026
$10.2M
STRUCTURE BASIS OF IMMUNE-CELL SURFACE RECEPTOR FUNCTIONR01AI037581 · NIAID · HARVARD UNIVERSITY (MEDICAL SCHOOL) · PI WAGNER, GERHARD · 1996 to 2021
$6.7M
Understanding the structural basis of T cell receptor (TCR) and preTCR mechanosensing: single molecule, NMR and molecular dynamics studiesR01AI136301 · NIAID · VANDERBILT UNIVERSITY · PI LANG, MATTHEW J. · 2018 to 2022
$3.9M
NMR-based dynamic assessment of TCR transmembrane conformational states linked to T cell functionR01AI136960 · NIAID · DANA-FARBER CANCER INST · PI REINHERZ, ELLIS L · 2018 to 2022
$2.2M
New RF Electronics Console and Probes for 900 Mhz NMR SpectrometerS10OD023513 · OD · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GRIFFIN, ROBERT GUY · 2018 to 2018
$1.0M
600 MHz NMR Spectrometer ConsoleS10OD028526 · OD · HARVARD MEDICAL SCHOOL · PI WAGNER, GERHARD · 2020 to 2020
$649k
NHLBI NIH HHS T32 HL066987NIAID NIH HHS P01 AI143565NIAID NIH HHS R01 AI037581NIAID NIH HHS R01 AI136301NIAID NIH HHS R01 AI136960NIBIB NIH HHS P41 EB002026NIGMS NIH HHS P01 GM047467NIH HHS S10 OD023513NIH HHS S10 OD028526
6 · The paper itself

Abstract

Self-discrimination, a critical but ill-defined molecular process programmed during thymocyte development, requires myriad pre-T cell receptors (preTCRs) and αβTCRs. Using x-ray crystallography, we show how a preTCR applies the concave β-sheet surface of its single variable domain (Vβ) to "horizontally" grab the protruding MHC α2-helix. By contrast, αβTCRs purpose all six complementarity-determining region (CDR) loops of their paired VαVβ module to recognize peptides bound to major histocompatibility complex molecules (pMHCs) in "vertical" head-to-head binding. The preTCR topological fit ensures that CDR3β reaches the peptide's featured C-terminal segment for pMHC sampling, establishing the subsequent αβTCR canonical docking mode. "Horizontal" docking precludes germline CDR1β- and CDR2β-MHC binding to broaden β-chain repertoire diversification before αβTCR-mediated selection refinement. Thus, one subunit successively attunes the recognition logic of related multicomponent receptors.

Indexed as

AnimalsCrystallography, X-RayHumansLigandsMajor Histocompatibility ComplexMiceProtein Conformation, alpha-HelicalProtein Conformation, beta-StrandReceptors, Antigen, T-Cell, alpha-betaThymocytesLigandsReceptors, Antigen, T-Cell, alpha-beta

Identifiers

PMID33335016
PMCPMC8011828
OpenAlexW3112715492

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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.