Evidence map›Paper›PMID 33334398›Full record

ReviewEuro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin2020

Estimating the false-negative test probability of SARS-CoV-2 by RT-PCR.

Paul S Wikramaratna, Robert S Paton, Mahan Ghafari, José Lourenço

Open access · diamondAbstract readReview
In one paragraph

Review in Euro surveillance : bulletin Europeen sur les maladies transmissibles = European communicable disease bulletin, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 169 papers, 9 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
169citing papers in PubMed, 9 pooled it
5.8field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

169 citing papers in PubMed, 9 syntheses or guidelines pooled it, 258 citations in OpenAlex.

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  6. Kawasaki-like disease in children with COVID-19.Rheumatology international · 2020
    Pooled it
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  8. The incidence of the novel coronavirus SARS-CoV-2 among asymptomatic patients: A systematic review.International journal of infectious diseases : IJID : official publication of the International Society for Infectious Diseases · 2020
    Pooled it
  9. A systematic review of CT chest in COVID-19 diagnosis and its potential application in a surgical setting.Colorectal disease : the official journal of the Association of Coloproctology of Great Britain and Ireland · 2020
    Pooled it
  10. A multi-country phase 2 study to evaluate the suitcase lab for rapid detection of SARS-CoV-2 in seven Sub-Saharan African countries: Lessons from the field.Journal of clinical virology : the official publication of the Pan American Society for Clinical Virology · 2023
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  17. Detecting Monkeypox Virus by Immunohistochemistry.Journal of cutaneous pathology · 2025
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109 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

4 authors at 1 institution in 1 country.

Paul S WikramaratnaThese authors contributed equally to this article and share first authorship.
Robert S PatonThese authors contributed equally to this article and share first authorship.
Mahan GhafariDepartment of Zoology, University of Oxford, Oxford, United Kingdom.
José LourençoDepartment of Zoology, University of Oxford, Oxford, United Kingdom.
University of Oxford · GB

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

BackgroundReverse-transcription PCR (RT-PCR) assays are used to test for infection with the SARS-CoV-2 virus. RT-PCR tests are highly specific and the probability of false positives is low, but false negatives are possible depending on swab type and time since symptom onset.AimTo determine how the probability of obtaining a false-negative test in infected patients is affected by time since symptom onset and swab type.MethodsWe used generalised additive mixed models to analyse publicly available data from patients who received multiple RT-PCR tests and were identified as SARS-CoV-2 positive at least once.ResultsThe probability of a positive test decreased with time since symptom onset, with oropharyngeal (OP) samples less likely to yield a positive result than nasopharyngeal (NP) samples. The probability of incorrectly identifying an uninfected individual due to a false-negative test was considerably reduced if negative tests were repeated 24 hours later. For a small false-positive test probability (<0.5%), the true number of infected individuals was larger than the number of positive tests. For a higher false-positive test probability, the true number of infected individuals was smaller than the number of positive tests.ConclusionNP samples are more sensitive than OP samples. The later an infected individual is tested after symptom onset, the less likely they are to test positive. This has implications for identifying infected patients, contact tracing and discharging convalescing patients who are potentially still infectious.

Indexed as

COVID-19 Nucleic Acid TestingReverse Transcriptase Polymerase Chain ReactionCOVID-19False Negative ReactionsHumansNasopharynxOropharynxProbabilityReproducibility of ResultsSARS-CoV-2Sensitivity and SpecificityTime FactorsaccuracyCOVID-19RT-PCRSARS-CoV-2testing

Identifiers

PMID33334398
PMCPMC7812420
OpenAlexW3112465516

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.