Evidence map›Paper›PMID 33334310›Full record

ArticleBMC bioinformatics2020

Menoci: lightweight extensible web portal enhancing data management for biomedical research projects.

M Suhr, C Lehmann, C R Bauer, T Bender, C Knopp, L Freckmann, B Öst Hansen, C Henke, G Aschenbrandt, L K Kühlborn and 8 more

Abstract read
PubMed Full text at PMC Publisher
In one paragraph

Article in BMC bioinformatics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 2 papers.

0numbers the graph read from it
0cells of the map it votes in
2citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

2 citing papers in PubMed.

  1. Article
  2. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors.

M SuhrDepartment of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany. markus.suhr@med.uni-goettingen.de.ORCID http://orcid.org/0000-0002-6307-3253
C LehmannDepartment of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany.
C R BauerDepartment of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany.
T BenderDepartment of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany.
C KnoppDepartment of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany.
L FreckmannDepartment of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany.
B Öst HansenDepartment of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany.
C HenkeDepartment of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany.
G AschenbrandtDepartment of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany.
L K KühlbornDepartment of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany.
S RheinländerDepartment of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany.
L WeberDepartment of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany.
B MarzecDepartment of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany.
M HellkampGWDG, Gesellschaft für Wissenschaftliche Datenverarbeitung mbH Göttingen, Am Faßberg 11, 37077, Göttingen, Germany.
P WiederGWDG, Gesellschaft für Wissenschaftliche Datenverarbeitung mbH Göttingen, Am Faßberg 11, 37077, Göttingen, Germany.
U SaxDepartment of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany.
H KuschDepartment of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany.
S Y NussbeckDepartment of Medical Informatics, University Medical Center Göttingen, von-Siebold-Str. 3, 37075, Göttingen, Germany.

Funding

DFG Deutsche Forschungsgemeinschaft 223309987DFG Deutsche Forschungsgemeinschaft 290108888
6 · The paper itself

Abstract

backgroundBiomedical research projects deal with data management requirements from multiple sources like funding agencies' guidelines, publisher policies, discipline best practices, and their own users' needs. We describe functional and quality requirements based on many years of experience implementing data management for the CRC 1002 and CRC 1190. A fully equipped data management software should improve documentation of experiments and materials, enable data storage and sharing according to the FAIR Guiding Principles while maximizing usability, information security, as well as software sustainability and reusability.

resultsWe introduce the modular web portal software menoci for data collection, experiment documentation, data publication, sharing, and preservation in biomedical research projects. Menoci modules are based on the Drupal content management system which enables lightweight deployment and setup, and creates the possibility to combine research data management with a customisable project home page or collaboration platform.

conclusionsManagement of research data and digital research artefacts is transforming from individual researcher or groups best practices towards project- or organisation-wide service infrastructures. To enable and support this structural transformation process, a vital ecosystem of open source software tools is needed. Menoci is a contribution to this ecosystem of research data management tools that is specifically designed to support biomedical research projects.

Indexed as

Biomedical ResearchSoftwareDatabases, FactualData ManagementInformation Storage and RetrievalData managementDrupalFAIRLinked dataMetadataOpen sourcePersistent identifiersResearch data managementSoftware

Identifiers

PMID33334310
PMCPMC7745495

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.