Evidence map›Paper›PMID 33333809›Full record

ReviewMolecules (Basel, Switzerland)2020

The Role of Conformational Dynamics in the Recognition and Regulation of Ubiquitination.

Domarin Khago, Ian J Fucci, Robert Andrew Byrd

Open access · goldAbstract readReview
In one paragraph

Review in Molecules (Basel, Switzerland), 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.5field-weighted citation impact, top 36% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 16 citations in OpenAlex.

  1. Article
  2. Article
  3. Aberrant cohesin function inbioRxiv : the preprint server for biology · 2025
    Article
  4. Review
  5. Unraveling the Roles of UBE3A in Neurodevelopment and Neurodegeneration.International journal of molecular sciences · 2025
    Review
  6. An expanded lexicon for the ubiquitin code.Nature reviews. Molecular cell biology · 2023
    Review
  7. Biological Functions of Hydrogen Sulfide in Plants.International journal of molecular sciences · 2022
    Review
  8. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

3 authors at 1 institution in 1 country.

Domarin KhagoStructural Biophysics Laboratory, Center for Cancer Research, National Cancer Institute, P.O. Box B, Building 538, Frederick, MD 21702-1201, USA.ORCID 0000-0001-5676-6804
Ian J FucciStructural Biophysics Laboratory, Center for Cancer Research, National Cancer Institute, P.O. Box B, Building 538, Frederick, MD 21702-1201, USA.ORCID 0000-0001-5146-4129
Robert Andrew ByrdStructural Biophysics Laboratory, Center for Cancer Research, National Cancer Institute, P.O. Box B, Building 538, Frederick, MD 21702-1201, USA.ORCID 0000-0003-3625-4232
National Cancer Institute · US

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The ubiquitination pathway is central to many cell signaling and regulatory events. One of the intriguing aspects of the pathway is the combinatorial sophistication of substrate recognition and ubiquitin chain building determinations. The abundant structural and biological data portray several characteristic protein folds among E2 and E3 proteins, and the understanding of the combinatorial complexity that enables interaction with much of the human proteome is a major goal to developing targeted and selective manipulation of the pathway. With the commonality of some folds, there are likely other aspects that can provide differentiation and recognition. These aspects involve allosteric effects and conformational dynamics that can direct recognition and chain building processes. In this review, we will describe the current state of the knowledge for conformational dynamics across a wide timescale, address the limitations of present approaches, and illustrate the potential to make new advances in connecting dynamics with ubiquitination regulation.

Indexed as

Protein ConformationUbiquitinUbiquitinationAllosteric RegulationHumansModels, MolecularProtein BindingUbiquitin-Conjugating EnzymesUbiquitin-Protein LigasesUbiquitinUbiquitin-Conjugating EnzymesUbiquitin-Protein Ligasesallosteryconformational dynamicsE2NMRreally interesting new gene (RING) E3relaxationubiquitinubiquitination

Identifiers

PMID33333809
PMCPMC7765195
OpenAlexW3111030027

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.