Evidence map›Paper›PMID 33333077›Full record

ArticleArchives of biochemistry and biophysics2021

Structural analysis of prolines and hydroxyprolines binding to the l-glutamate-γ-semialdehyde dehydrogenase active site of bifunctional proline utilization A.

Ashley C Campbell, Alexandra N Bogner, Yizi Mao, Donald F Becker, John J Tanner

Open access · bronzeAbstract read
In one paragraph

Article in Archives of biochemistry and biophysics, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
0.6field-weighted citation impact, top 39% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 16 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 1 country.

Ashley C CampbellDepartment of Biochemistry, University of Missouri, Columbia, MO, 65211, United States.
Alexandra N BognerDepartment of Biochemistry, University of Missouri, Columbia, MO, 65211, United States.
Yizi MaoDepartment of Biochemistry, Redox Biology Center, University of Nebraska, Lincoln, NE, 68588, United States.
Donald F BeckerDepartment of Biochemistry, Redox Biology Center, University of Nebraska, Lincoln, NE, 68588, United States.
John J TannerDepartment of Biochemistry, University of Missouri, Columbia, MO, 65211, United States; Department of Chemistry, University of Missouri, Columbia, MO, 65211, United States. Electronic address: tannerjj@missouri.edu.
University of Missouri · USUniversity of Nebraska–Lincoln · US

Funding

User Training and OutreachP30GM124169 · NIGMS · UNIVERSITY OF CALIF-LAWRENC BERKELEY LAB · PI PAUL David ADAMS, Gregory L Hura · 2017 to 2026
$28.6M
Investigating the Proline Cycle as a Potential Cancer Therapy TargetR01GM132640 · NIGMS · UNIVERSITY OF MISSOURI-COLUMBIA · PI Donald F Becker, JOHN J TANNER · 2020 to 2026
$1.9M
NIGMS NIH HHS P30 GM124169NIGMS NIH HHS R01 GM132640
6 · The paper itself

Abstract

Proline utilization A (PutA) proteins are bifunctional proline catabolic enzymes that catalyze the 4-electron oxidation of l-proline to l-glutamate using spatially-separated proline dehydrogenase and l-glutamate-γ-semialdehyde dehydrogenase (GSALDH, a.k.a. ALDH4A1) active sites. The observation that l-proline inhibits both the GSALDH activity of PutA and monofunctional GSALDHs motivated us to study the inhibition of PutA by proline stereoisomers and analogs. Here we report five high-resolution crystal structures of PutA with the following ligands bound in the GSALDH active site: d-proline, trans-4-hydroxy-d-proline, cis-4-hydroxy-d-proline, l-proline, and trans-4-hydroxy-l-proline. Three of the structures are of ternary complexes of the enzyme with an inhibitor and either NAD

Indexed as

Bacterial ProteinsCatalytic DomainCrystallography, X-RayEnzyme InhibitorsGlutamate-5-Semialdehyde DehydrogenaseHydroxyprolineMembrane ProteinsProlineProtein BindingSinorhizobium melilotiStereoisomerismBacterial ProteinsEnzyme InhibitorsGlutamate-5-Semialdehyde DehydrogenaseHydroxyprolineMembrane ProteinsProlinePutA protein, BacteriaALDH4A1Enzyme inhibitionl-glutamate-γ-semialdehyde dehydrogenaseProline metabolismX-ray crystallography

Identifiers

PMID33333077
PMCPMC7856085
OpenAlexW3111370901

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.