Evidence map›Paper›PMID 33333019›Full record

ArticleCell2021

RNA-Mediated Feedback Control of Transcriptional Condensates.

Jonathan E Henninger, Ozgur Oksuz, Krishna Shrinivas, Ido Sagi, Gary LeRoy, Ming M Zheng, J Owen Andrews, Alicia V Zamudio, Charalampos Lazaris, Nancy M Hannett and 5 more

Open access · bronzeAbstract read
In one paragraph

Article in Cell, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 331 papers.

0numbers the graph read from it
0cells of the map it votes in
331citing papers in PubMed
26.7field-weighted citation impact, top 1% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

331 citing papers in PubMed, 601 citations in OpenAlex.

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  17. Direct roles of long non-coding RNAs in transcription activation.Nature structural & molecular biology · 2026
    Review
  18. Review
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  20. Article

271 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

15 authors at 5 institutions in 1 country.

Jonathan E HenningerWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.
Ozgur OksuzWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.
Krishna ShrinivasDepartment of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Institute of Medical Engineering and Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; NSF-Simons Center for Mathematical & Statistical Analysis of Biology, Harvard University, Cambridge, MA 02138, USA.
Ido SagiWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.
Gary LeRoyHoward Hughes Medical Institute, New York University School of Medicine, New York, NY 10016, USA; Department of Biochemistry and Molecular Pharmacology, New York University School of Medicine, New York, NY 10016, USA.
Ming M ZhengDepartment of Physics, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
J Owen AndrewsDepartment of Physics, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Alicia V ZamudioWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Charalampos LazarisWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA; Klarman Cell Observatory, Broad Institute of MIT and Harvard, Cambridge, MA 02142, USA.
Nancy M HannettWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.
Tong Ihn LeeWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA.
Phillip A SharpDepartment of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Koch Institute for Integrative Cancer Research, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Ibrahim I CisséDepartment of Physics, Massachusetts Institute of Technology, Cambridge, MA 02139, USA.
Arup K ChakrabortyDepartment of Chemical Engineering, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Department of Physics, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Department of Chemistry, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Institute of Medical Engineering and Science, Massachusetts Institute of Technology, Cambridge, MA 02139, USA; Ragon Institute of Massachusetts General Hospital, MIT and Harvard University, Cambridge, MA 02139, USA. Electronic address: arupc@mit.edu.
Richard A YoungWhitehead Institute for Biomedical Research, Cambridge, MA 02142, USA; Department of Biology, Massachusetts Institute of Technology, Cambridge, MA 02139, USA. Electronic address: young@wi.mit.edu.
Whitehead Institute for Biomedical Research · USMassachusetts Institute of Technology · USBroad Institute · USHarvard University · USHoward Hughes Medical Institute · US

Funding

VIRUS PRODUCTION COREP30CA014051 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI Paula T Hammond · 1985 to 2026
$93.9M
Targeting Genomic Instability and Evolution in MyelomaP01CA155258 · NCI · DANA-FARBER CANCER INST · PI Jill Corre · 2011 to 2026
$32.5M
USE OF RETROVIRUS PROMOTER TRAP VECTORS TO IDENTIFY ONCOGENES AND ANTI-ONCOGENESP01CA042063 · NCI · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI LEES, JACQUELINE A. · 1986 to 2021
$30.5M
REGULATION OF MRNA PROCESSINGR01GM034277 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI SHARP, PHILLIP A · 1985 to 2021
$8.0M
Transcriptional regulatory networks in living cellsR01GM123511 · NIGMS · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI YOUNG, RICHARD · 2017 to 2020
$3.6M
Nuclear Organization and Dynamics of Mediator and RNA Polymerase II in Living Stem CellsR01GM134734 · NIGMS · MASSACHUSETTS INSTITUTE OF TECHNOLOGY · PI GORE, JEFF · 2019 to 2022
$1.2M
RNA-mediated Feedback Control of Oncogenic TranscriptionF32CA254216 · NCI · WHITEHEAD INSTITUTE FOR BIOMEDICAL RES · PI HENNINGER, JONATHAN EDWARD · 2020 to 2022
$206k
NCI NIH HHS F32 CA254216NCI NIH HHS P01 CA042063NCI NIH HHS P01 CA155258NCI NIH HHS P30 CA014051NIGMS NIH HHS R01 GM034277NIGMS NIH HHS R01 GM123511NIGMS NIH HHS R01 GM134734
6 · The paper itself

Abstract

Regulation of biological processes typically incorporates mechanisms that initiate and terminate the process and, where understood, these mechanisms often involve feedback control. Regulation of transcription is a fundamental cellular process where the mechanisms involved in initiation have been studied extensively, but those involved in arresting the process are poorly understood. Modeling of the potential roles of RNA in transcriptional control suggested a non-equilibrium feedback control mechanism where low levels of RNA promote condensates formed by electrostatic interactions whereas relatively high levels promote dissolution of these condensates. Evidence from in vitro and in vivo experiments support a model where RNAs produced during early steps in transcription initiation stimulate condensate formation, whereas the burst of RNAs produced during elongation stimulate condensate dissolution. We propose that transcriptional regulation incorporates a feedback mechanism whereby transcribed RNAs initially stimulate but then ultimately arrest the process.

Indexed as

Feedback, PhysiologicalTranscription, GeneticAnimalsMediator ComplexMiceModels, BiologicalMouse Embryonic Stem CellsRNAStatic ElectricityMediator ComplexRNAcomplex coacervatesenhancerfeedbackmediatornoncoding RNAnon-equilibriumphase separationRNAtranscriptiontranscriptional condensates

Identifiers

PMID33333019
PMCPMC8128340
OpenAlexW3111998353

What OpenQuestion holds

Textmetadata
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Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.