Evidence map›Paper›PMID 33329940›Full record

ArticleTranslational vision science & technology2020

DeepRetina: Layer Segmentation of Retina in OCT Images Using Deep Learning.

Qiaoliang Li, Shiyu Li, Zhuoying He, Huimin Guan, Runmin Chen, Ying Xu, Tao Wang, Suwen Qi, Jun Mei, Wei Wang

Open access · goldAbstract read
In one paragraph

Article in Translational vision science & technology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 29 papers.

0numbers the graph read from it
0cells of the map it votes in
29citing papers in PubMed
4.1field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

29 citing papers in PubMed, 72 citations in OpenAlex.

  1. AI-driven multimodal retinal imaging for early detection and risk stratification of vascular and neurodegenerative diseases.Graefe's archive for clinical and experimental ophthalmology = Albrecht von Graefes Archiv fur klinische und experimentelle Ophthalmologie · 2026
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  14. Recent advances in artificial intelligent strategies for tissue engineering and regenerative medicine.Skin research and technology : official journal of International Society for Bioengineering and the Skin (ISBS) [and] International Society for Digital Imaging of Skin (ISDIS) [and] International Society for Skin Imaging (ISSI) · 2024
    Review
  15. Article
  16. Deep learning in optical coherence tomography: Where are the gaps?Clinical & experimental ophthalmology · 2023
    Review
  17. PseudoSegRT: efficient pseudo-labelling for intraoperative OCT segmentation.International journal of computer assisted radiology and surgery · 2023
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

10 authors at 2 institutions in 1 country.

Qiaoliang LiNational-Regional Key Technology Engineering Laboratory for Medical Ultrasound, Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, Department of Biomedical Engineering, School of Medicine, Shenzhen University, Xueyuan Avenue, Nanshan District, Shenzhen, Guangdong Province, China.
Shiyu LiNational-Regional Key Technology Engineering Laboratory for Medical Ultrasound, Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, Department of Biomedical Engineering, School of Medicine, Shenzhen University, Xueyuan Avenue, Nanshan District, Shenzhen, Guangdong Province, China.
Zhuoying HeNational-Regional Key Technology Engineering Laboratory for Medical Ultrasound, Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, Department of Biomedical Engineering, School of Medicine, Shenzhen University, Xueyuan Avenue, Nanshan District, Shenzhen, Guangdong Province, China.
Huimin GuanNational-Regional Key Technology Engineering Laboratory for Medical Ultrasound, Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, Department of Biomedical Engineering, School of Medicine, Shenzhen University, Xueyuan Avenue, Nanshan District, Shenzhen, Guangdong Province, China.
Runmin ChenNational-Regional Key Technology Engineering Laboratory for Medical Ultrasound, Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, Department of Biomedical Engineering, School of Medicine, Shenzhen University, Xueyuan Avenue, Nanshan District, Shenzhen, Guangdong Province, China.
Ying XuNational-Regional Key Technology Engineering Laboratory for Medical Ultrasound, Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, Department of Biomedical Engineering, School of Medicine, Shenzhen University, Xueyuan Avenue, Nanshan District, Shenzhen, Guangdong Province, China.
Tao WangNational-Regional Key Technology Engineering Laboratory for Medical Ultrasound, Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, Department of Biomedical Engineering, School of Medicine, Shenzhen University, Xueyuan Avenue, Nanshan District, Shenzhen, Guangdong Province, China.
Suwen QiNational-Regional Key Technology Engineering Laboratory for Medical Ultrasound, Guangdong Key Laboratory for Biomedical Measurements and Ultrasound Imaging, Department of Biomedical Engineering, School of Medicine, Shenzhen University, Xueyuan Avenue, Nanshan District, Shenzhen, Guangdong Province, China.
Jun MeiMedical Imaging Department of Shenzhen Eye Hospital Affiliated to Jinan University, Shenzhen, Guangdong Province, China.
Wei WangDepartment of Pathology, Shenzhen University General Hospital, Shenzhen, Guangdong Province, China.
Shenzhen University · CNJinan University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Purpose: To automate the segmentation of retinal layers, we propose DeepRetina, a method based on deep neural networks. Methods: DeepRetina uses the improved Xception65 to extract and learn the characteristics of retinal layers. The Xception65-extracted feature maps are inputted to an atrous spatial pyramid pooling module to obtain multiscale feature information. This information is then recovered to capture clearer retinal layer boundaries in the encoder-decoder module, thus completing retinal layer auto-segmentation of the retinal optical coherence tomography (OCT) images. Results: We validated this method using a retinal OCT image database containing 280 volumes (40 B-scans per volume) to demonstrate its effectiveness. The results showed that the method exhibits excellent performance in terms of the mean intersection over union and sensitivity (Se), which are as high as 90.41 and 92.15%, respectively. The intersection over union and Se values of the nerve fiber layer, ganglion cell layer, inner plexiform layer, inner nuclear layer, outer plexiform layer, outer nuclear layer, outer limiting membrane, photoreceptor inner segment, photoreceptor outer segment, and pigment epithelium layer were found to be above 88%. Conclusions: DeepRetina can automate the segmentation of retinal layers and has great potential for the early diagnosis of fundus retinal diseases. In addition, our approach will provide a segmentation model framework for other types of tissues and cells in clinical practice. Translational Relevance: Automating the segmentation of retinal layers can help effectively diagnose and monitor clinical retinal diseases. In addition, it requires only a small amount of manual segmentation, significantly improving work efficiency.

Indexed as

Deep LearningRetinal DiseasesHumansRetinaTomography, Optical Coherenceauto-segmentationdeep neural networkDeepRetinaOCT imageretinal layer

Identifiers

PMID33329940
PMCPMC7726589
OpenAlexW3113225488

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.