Evidence map›Paper›PMID 33329485›Full record

ArticleFrontiers in microbiology2020

The Network of Interactions Between Classical Swine Fever Virus Nonstructural Protein p7 and Host Proteins.

Jindai Fan, Mengru Zhang, Chenchen Liu, Mengjiao Zhu, Zilin Zhang, Keke Wu, Zhaoyao Li, Wenhui Li, Shuangqi Fan, Chunmei Ju and 4 more

Open access · goldAbstract read
In one paragraph

Article in Frontiers in microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 9 papers.

0numbers the graph read from it
0cells of the map it votes in
9citing papers in PubMed
1.3field-weighted citation impact, top 19% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

9 citing papers in PubMed, 13 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

14 authors at 2 institutions in 1 country.

Jindai FanDepartment of Microbiology and Immunology, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China.
Mengru ZhangDepartment of Microbiology and Immunology, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China.
Chenchen LiuDepartment of Microbiology and Immunology, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China.
Mengjiao ZhuDepartment of Microbiology and Immunology, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China.
Zilin ZhangDepartment of Microbiology and Immunology, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China.
Keke WuDepartment of Microbiology and Immunology, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China.
Zhaoyao LiDepartment of Microbiology and Immunology, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China.
Wenhui LiDepartment of Microbiology and Immunology, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China.
Shuangqi FanDepartment of Microbiology and Immunology, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China.
Chunmei JuDepartment of Microbiology and Immunology, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China.
Lin YiDepartment of Microbiology and Immunology, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China.
Hongxing DingDepartment of Microbiology and Immunology, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China.
Mingqiu ZhaoDepartment of Microbiology and Immunology, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China.
Jinding ChenDepartment of Microbiology and Immunology, College of Veterinary Medicine, South China Agricultural University, Guangzhou, China.
Key Laboratory of Guangdong Province · CNSouth China Agricultural University · CN

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Classical swine fever (CSF) is a highly contagious viral disease causing severe economic losses to the swine industry. As viroporins of viruses modulate the cellular ion balance and then take over the cellular machinery, blocking the activity of viroporin or developing viroporin-defective attenuated vaccines offers new approaches to treat or prevent viral infection. Non-structural protein p7 of CSF virus (CSFV) is a viroporin, which was highly involved in CSFV virulence. Deciphering the interaction between p7 and host proteins will aid our understanding of the mechanism of p7-cellular protein interaction affecting CSFV replication. In the present study, seven host cellular proteins including microtubule-associated protein RP/EB family member 1 (MAPRE1), voltage-dependent anion channel 1 (VDAC1), proteasome maturation protein (POMP), protein inhibitor of activated STAT 1 (PIAS1), gametogenetin binding protein 2 (GGNBP2), COP9 signalosome subunit 2 (COPS2), and contactin 1 (CNTN1) were identified as the potential interactive cellular proteins of CSFV p7 by using yeast two-hybrid (Y2H) screening. Plus, the interaction of CSFV p7 with MAPRE1 and VDAC1 was further evaluated by co-immunoprecipitation and GST-pulldown assay. Besides, the p7-cellular protein interaction network was constructed based on these seven host cellular proteins and the STRING database. Enrichment analysis of GO and KEGG indicated that many host proteins in the p7-cellular protein interaction network were mainly related to the ubiquitin-proteasome system, cGMP-PKG signaling pathway, calcium signaling pathway, and JAK-STAT pathway. Overall, this study identified potential interactive cellular proteins of CSFV p7, constructed the p7-cellular protein interaction network, and predicted the potential pathways involved in the interaction between CSFV p7 and host cells.

Indexed as

classical swine fever virusinteraction networkp7protein interactionubiquitin-proteasome system

Identifiers

PMID33329485
PMCPMC7733924
OpenAlexW3109576579

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.