Evidence map›Paper›PMID 33329461›Full record

ArticleFrontiers in microbiology2020

DNA-Stable Isotope Probing Shotgun Metagenomics Reveals the Resilience of Active Microbial Communities to Biochar Amendment in Oxisol Soil.

Julian Yu, Michael J Pavia, Lauren M Deem, Susan E Crow, Jonathan L Deenik, Christopher Ryan Penton

Abstract read
In one paragraph

Article in Frontiers in microbiology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed.

  1. Review
  2. Article
  3. Article
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

Julian YuSchool of Life Sciences, Arizona State University, Tempe, AZ, United States.
Michael J PaviaSchool of Life Sciences, Arizona State University, Tempe, AZ, United States.
Lauren M DeemNatural Resources and Environmental Management, University of Hawai'i at Mânoa, Honolulu, HI, United States.
Susan E CrowNatural Resources and Environmental Management, University of Hawai'i at Mânoa, Honolulu, HI, United States.
Jonathan L DeenikTropical Plant and Soil Sciences, University of Hawai'i at Mânoa, Honolulu, HI, United States.
Christopher Ryan PentonCenter for Fundamental and Applied Microbiomics, The Biodesign Institute, Arizona State University, Tempe, AZ, United States.

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

The functions and interactions of individual microbial populations and their genes in agricultural soils amended with biochar remain elusive but are crucial for a deeper understanding of nutrient cycling and carbon (C) sequestration. In this study, we coupled DNA stable isotope probing (SIP) with shotgun metagenomics in order to target the active community in microcosms which contained soil collected from biochar-amended and control plots under napiergrass cultivation. Our analyses revealed that the active community was composed of high-abundant and low-abundant populations, including

Indexed as

active bacterial populationsbiochar amendmentcarbon sequestrationdenitrificationisopycnic centrifugationmetagenomic assembled genomesNextseq sequencing

Identifiers

PMID33329461
PMCPMC7717982

What OpenQuestion holds

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LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.