Evidence map›Paper›PMID 33328453›Full record

ArticleNature communications2020

Genetic architecture of host proteins involved in SARS-CoV-2 infection.

Maik Pietzner, Eleanor Wheeler, Julia Carrasco-Zanini, Johannes Raffler, Nicola D Kerrison, Erin Oerton, Victoria P W Auyeung, Jian'an Luan, Chris Finan, Juan P Casas and 8 more

Erratum issuedOpen access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. An erratum has been issued. Cited by 89 papers, 4 of them syntheses that pooled it.

0numbers the graph read from it
0cells of the map it votes in
89citing papers in PubMed, 4 pooled it
1.8field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

89 citing papers in PubMed, 4 syntheses or guidelines pooled it, 146 citations in OpenAlex.

  1. Pooled it
  2. Pooled it
  3. Pooled it
  4. Association of Protein C, but Not Protein S or Antithrombin With Ischemic Stroke: Bidirectional Two-Sample Mendelian Randomization and Meta-Analysis.Clinical and applied thrombosis/hemostasis : official journal of the International Academy of Clinical and Applied Thrombosis/Hemostasis
    Pooled it
  5. Article
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  8. Proteogenomics in human populations.Nature reviews. Genetics · 2026
    Review
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29 more citing papers are in PubMed but not listed here.

4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

18 authors at 6 institutions in 3 countries.

Maik PietznerMRC Epidemiology Unit, University of Cambridge, Cambridge, UK.
Eleanor WheelerMRC Epidemiology Unit, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0002-8616-6444
Julia Carrasco-ZaniniMRC Epidemiology Unit, University of Cambridge, Cambridge, UK.
Johannes RafflerInstitute of Computational Biology, Helmholtz Zentrum München - German Research Center for Environmental Health, Neuherberg, Germany.ORCID http://orcid.org/0000-0003-2495-4020
Nicola D KerrisonMRC Epidemiology Unit, University of Cambridge, Cambridge, UK.
Erin OertonMRC Epidemiology Unit, University of Cambridge, Cambridge, UK.
Victoria P W AuyeungMRC Epidemiology Unit, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0002-0823-3963
Jian'an LuanMRC Epidemiology Unit, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0003-3137-6337
Chris FinanInstitute of Cardiovascular Science, Faculty of Population Health Sciences, University College London, London, WC1E 6BT, UK.ORCID http://orcid.org/0000-0002-3319-1937
Juan P CasasDepartment of Medicine, Brigham and Women's Hospital, Harvard Medical School, Boston, MA, USA.
Rachel OstroffSomaLogic, Inc., Boulder, CO, USA.
Steve A WilliamsSomaLogic, Inc., Boulder, CO, USA.ORCID http://orcid.org/0000-0002-8661-4315
Gabi KastenmüllerInstitute of Computational Biology, Helmholtz Zentrum München - German Research Center for Environmental Health, Neuherberg, Germany.ORCID http://orcid.org/0000-0002-2368-7322
Markus RalserThe Molecular Biology of Metabolism Laboratory, The Francis Crick Institute, London, UK.
Eric R GamazonMRC Epidemiology Unit, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0003-4204-8734
Nicholas J WarehamMRC Epidemiology Unit, University of Cambridge, Cambridge, UK.ORCID http://orcid.org/0000-0003-1422-2993
Aroon D HingoraniInstitute of Cardiovascular Science, Faculty of Population Health Sciences, University College London, London, WC1E 6BT, UK. a.hingorani@ucl.ac.uk.ORCID http://orcid.org/0000-0001-8365-0081
Claudia LangenbergMRC Epidemiology Unit, University of Cambridge, Cambridge, UK. claudia.langenberg@mrc-epid.cam.ac.uk.ORCID http://orcid.org/0000-0002-5017-7344
University of Cambridge · GBHelmholtz Zentrum München · DESomaLogic (United States) · USThe Francis Crick Institute · GBUCL Biomedical Research Centre · GBBrigham and Women's Hospital · US

Funding

Project 4 - Mechanistic studies on the role of the gut microbiome in models for Alzheimer's diseaseU19AG063744 · NIA · UNIVERSITY OF TEXAS HLTH SCI CTR HOUSTON · PI Rima F Kaddurah-Daouk · 2019 to 2026
$54.1M
Metabolomic Signatures for Disease Sub-classification and Target Prioritization in AMP-ADU01AG061359 · NIA · DUKE UNIVERSITY · PI KADDURAH-DAOUK, RIMA F, KASTENMULLER, GABI · 2018 to 2022
$10.0M
Metabolic Networks and Pathways Predictive of Sex Differences in AD Risk and Responsiveness to TreatmentRF1AG059093 · NIA · DUKE UNIVERSITY · PI BRINTON, ROBERTA EILEEN, CHANG, RUI · 2018 to 2018
$5.9M
Metabolic Network Analysis of Biochemical Trajectories in Alzheimer's DiseaseRF1AG057452 · NIA · DUKE UNIVERSITY · PI KADDURAH-DAOUK, RIMA F, KASTENMULLER, GABI · 2017 to 2017
$3.5M
Gut Liver Brain Biochemical Axis in Alzheimer's DiseaseRF1AG058942 · NIA · DUKE UNIVERSITY · PI KADDURAH-DAOUK, RIMA F, VAN DUIJN, CORNELIA MARJA · 2018 to 2018
$3.4M
Functional Genomics: A Phenome-wide SurveyR35HG010718 · NHGRI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI GAMAZON, ERIC R · 2019 to 2023
$2.2M
Advancing Multi-Omics and Electronic Health Records Computational MethodologiesR01HG011138 · NHGRI · VANDERBILT UNIVERSITY MEDICAL CENTER · PI GAMAZON, ERIC R · 2020 to 2024
$1.6M
British Heart Foundation AA/18/6/34223Cancer Research UK FC001134Department of HealthMedical Research Council FC001134Medical Research Council MC_PC_13046Medical Research Council MC_UU_00006/1Medical Research Council MC_UU_12015/1NHGRI NIH HHS R01 HG011138NHGRI NIH HHS R35 HG010718NIA NIH HHS RF1 AG057452NIA NIH HHS RF1 AG058942NIA NIH HHS RF1 AG059093NIA NIH HHS U01 AG061359NIA NIH HHS U19 AG063744Wellcome Trust FC001134
6 · The paper itself

Abstract

Understanding the genetic architecture of host proteins interacting with SARS-CoV-2 or mediating the maladaptive host response to COVID-19 can help to identify new or repurpose existing drugs targeting those proteins. We present a genetic discovery study of 179 such host proteins among 10,708 individuals using an aptamer-based technique. We identify 220 host DNA sequence variants acting in cis (MAF 0.01-49.9%) and explaining 0.3-70.9% of the variance of 97 of these proteins, including 45 with no previously known protein quantitative trait loci (pQTL) and 38 encoding current drug targets. Systematic characterization of pQTLs across the phenome identified protein-drug-disease links and evidence that putative viral interaction partners such as MARK3 affect immune response. Our results accelerate the evaluation and prioritization of new drug development programmes and repurposing of trials to prevent, treat or reduce adverse outcomes. Rapid sharing and detailed interrogation of results is facilitated through an interactive webserver ( https://omicscience.org/apps/covidpgwas/ ).

Indexed as

ABO Blood-Group SystemAptamers, PeptideBlood CoagulationCOVID-19Drug Delivery SystemsFemaleGene Expression RegulationHost-Derived Cellular FactorsHost-Pathogen InteractionsHumansInternetMaleMiddle AgedProteinsQuantitative Trait LociSARS-CoV-2ABO Blood-Group SystemAptamers, PeptideHost-Derived Cellular FactorsProteins

Identifiers

PMID33328453
PMCPMC7744536
OpenAlexW3111898055

What OpenQuestion holds

Textmetadata
LicenceCC BY
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.