Evidence map›Paper›PMID 33328310›Full record

ArticleJournal of virology2021

Interdomain Flexibility of Chikungunya Virus nsP2 Helicase-Protease Differentially Influences Viral RNA Replication and Infectivity.

Yee-Song Law, Sainan Wang, Yaw Bia Tan, Orion Shih, Age Utt, Wei Yang Goh, Bing-Jun Lian, Ming Wei Chen, U-Ser Jeng, Andres Merits and 1 more

Open access · greenAbstract read
In one paragraph

Article in Journal of virology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 31 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
31citing papers in PubMed, 1 pooled it
3.1field-weighted citation impact, top 8% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

31 citing papers in PubMed, 1 synthesis or guideline pooled it, 36 citations in OpenAlex.

  1. Pooled it
  2. Review
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  5. Article
  6. Microbiology spectrum · 2026
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  15. [Mother-to-Child Transmission of Chikungunya Virus and Its Impact on the Neonatal Nervous System].Sichuan da xue xue bao. Yi xue ban = Journal of Sichuan University. Medical science edition · 2025
    Review
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

11 authors at 4 institutions in 3 countries.

Yee-Song Law *Lee Kong Chian School of Medicine, Nanyang Technological University, Singapore.
Sainan Wang *Institute of Technology, University of Tartu, Tartu, Estonia.
Yaw Bia TanLee Kong Chian School of Medicine, Nanyang Technological University, Singapore.
Orion ShihNational Synchrotron Radiation Research Center, Hsinchu, Taiwan ROC.
Age UttInstitute of Technology, University of Tartu, Tartu, Estonia.
Wei Yang GohNTU Institute of Structural Biology, Nanyang Technological University, Singapore.
Bing-Jun LianNational Synchrotron Radiation Research Center, Hsinchu, Taiwan ROC.
Ming Wei ChenNTU Institute of Structural Biology, Nanyang Technological University, Singapore.
U-Ser JengNational Synchrotron Radiation Research Center, Hsinchu, Taiwan ROC.
Andres MeritsInstitute of Technology, University of Tartu, Tartu, Estonia andres.merits@ut.ee luodahai@ntu.edu.sg.ORCID 0000-0001-8193-0071
Dahai LuoLee Kong Chian School of Medicine, Nanyang Technological University, Singapore andres.merits@ut.ee luodahai@ntu.edu.sg.ORCID 0000-0001-7637-7275
Nanyang Technological University · SGUniversity of Tartu · EENational Tsing Hua University · TWNational Synchrotron Radiation Research Center · TW

Funding

Medical Research Council MC_PC_16028Wellcome Trust
6 · The paper itself

Abstract

Chikungunya virus (CHIKV) is a mosquito-borne alphavirus responsible for chikungunya fever. Nonstructural protein 2 (nsP2), a multifunctional protein essential for viral replication, has an N-terminal helicase region (nsP2h), which has both nucleotide triphosphatase and RNA triphosphatase activities, as well as a C-terminal cysteine protease region (nsP2p), which is responsible for nonstructural polyprotein processing. The two functional units are connected through a linker of 14 residues. Although crystal structures of the helicase and protease regions of CHIKV nsP2 have been solved separately, the conformational arrangement of the full-length nsP2 and the biological role of the linker remain elusive. Using the small-angle X-ray scattering (SAXS) method, we demonstrated that the full-length nsP2 is elongated and partially folded in solution. The reconstructed model of the structure of nsP2 contains a flexible interdomain linker, and there is no direct interaction between the two structured regions. To examine the function of the interdomain linker, we constructed and characterized a set of CHIKV mutants. The deletion of three or five amino acid residues in the linker region resulted in a modest defect in viral RNA replication and transcription but completely abolished viral infectivity. In contrast, increasing the flexibility of nsP2 by lengthening the interdomain linker increased both genomic RNA replication and viral infectivity. The enzymatic activities of the corresponding mutant proteins were largely unaffected. This work suggests that increasing the interdomain flexibility of nsP2 could facilitate the assembly of the replication complex (RC) with increased efficiency and promote virus production.

Indexed as

Virus ReplicationAmino Acid SequenceAnimalsCell LineChikungunya virusCysteine EndopeptidasesHumansMutationProtein Structure, TertiaryRNA HelicasesRNA, ViralViral Replicase Complex ProteinsCysteine EndopeptidasesnsP2 proteinaseRNA HelicasesRNA, ViralViral Replicase Complex Proteinsalphaviruschikungunya virusinterdomain linkernonstructural protein 2virus replication

Identifiers

PMID33328310
PMCPMC8094934
OpenAlexW3112126971

What OpenQuestion holds

Textmetadata
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.