Evidence map›Paper›PMID 33328229›Full record

ArticleScience advances2020

S-adenosyl-l-homocysteine hydrolase links methionine metabolism to the circadian clock and chromatin remodeling.

Carolina Magdalen Greco, Marlene Cervantes, Jean-Michel Fustin, Kakeru Ito, Nicholas Ceglia, Muntaha Samad, Jiejun Shi, Kevin Brian Koronowski, Ignasi Forne, Suman Ranjit and 9 more

Open access · goldAbstract read
In one paragraph

Article in Science advances, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
4.4field-weighted citation impact, top 4% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed, 82 citations in OpenAlex.

  1. Review
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  6. The GNMT N-terminus Couples Folate Feedback to Methyl-donor Homeostasis.bioRxiv : the preprint server for biology · 2026
    Article
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  20. Proceedings of the National Academy of Sciences of the United States of America · 2025
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

19 authors at 5 institutions in 4 countries.

Carolina Magdalen GrecoCenter for Epigenetics and Metabolism; U1233 INSERM; Department of Biological Chemistry, School of Medicine, University of California, Irvine (UCI), Irvine, CA, USA. psc@hs.uci.edu grecoc@hs.uci.edu.ORCID 0000-0002-9895-5635
Marlene CervantesCenter for Epigenetics and Metabolism; U1233 INSERM; Department of Biological Chemistry, School of Medicine, University of California, Irvine (UCI), Irvine, CA, USA.ORCID 0000-0003-4619-6144
Jean-Michel FustinGraduate School of Pharmaceutical Sciences, Department of Systems Biology, Kyoto University, Kyoto 606-8501, Japan.ORCID 0000-0002-6200-6075
Kakeru ItoGraduate School of Pharmaceutical Sciences, Department of Systems Biology, Kyoto University, Kyoto 606-8501, Japan.ORCID 0000-0003-1934-7242
Nicholas CegliaInstitute for Genomics and Bioinformatics, School of Information and Computer Sciences, University of California Irvine (UCI), Irvine, CA, USA.ORCID 0000-0001-9387-103X
Muntaha SamadInstitute for Genomics and Bioinformatics, School of Information and Computer Sciences, University of California Irvine (UCI), Irvine, CA, USA.
Jiejun ShiDepartment of Biological Chemistry, School of Medicine, University of California Irvine (UCI), Irvine, CA, USA.ORCID 0000-0001-9777-1183
Kevin Brian KoronowskiCenter for Epigenetics and Metabolism; U1233 INSERM; Department of Biological Chemistry, School of Medicine, University of California, Irvine (UCI), Irvine, CA, USA.ORCID 0000-0002-6808-1789
Ignasi ForneBiomedical Center, Protein Analysis Unit, Faculty of Medicine, Ludwig-Maximilians-Universität München, Großhaderner Strasse 9, 82152 Planegg-Martinsried, Germany.ORCID 0000-0003-0309-907X
Suman RanjitLaboratory for Fluorescence Dynamics, Department of Biomedical Engineering, University of California Irvine (UCI), Irvine, CA, USA.ORCID 0000-0003-3058-6332
Jonathan GaucherCenter for Epigenetics and Metabolism; U1233 INSERM; Department of Biological Chemistry, School of Medicine, University of California, Irvine (UCI), Irvine, CA, USA.ORCID 0000-0002-1654-8009
Kenichiro KinouchiCenter for Epigenetics and Metabolism; U1233 INSERM; Department of Biological Chemistry, School of Medicine, University of California, Irvine (UCI), Irvine, CA, USA.ORCID 0000-0003-4743-2583
Rika KojimaGraduate School of Pharmaceutical Sciences, Department of Systems Biology, Kyoto University, Kyoto 606-8501, Japan.ORCID 0000-0002-2745-960X
Enrico GrattonLaboratory for Fluorescence Dynamics, Department of Biomedical Engineering, University of California Irvine (UCI), Irvine, CA, USA.ORCID 0000-0002-6450-7391
Wei LiDepartment of Biological Chemistry, School of Medicine, University of California Irvine (UCI), Irvine, CA, USA.ORCID 0000-0001-9931-5990
Pierre BaldiInstitute for Genomics and Bioinformatics, School of Information and Computer Sciences, University of California Irvine (UCI), Irvine, CA, USA.ORCID 0000-0001-8752-4664
Axel ImhofBiomedical Center, Protein Analysis Unit, Faculty of Medicine, Ludwig-Maximilians-Universität München, Großhaderner Strasse 9, 82152 Planegg-Martinsried, Germany.ORCID 0000-0003-2993-8249
Hitoshi OkamuraGraduate School of Pharmaceutical Sciences, Department of Systems Biology, Kyoto University, Kyoto 606-8501, Japan.ORCID 0000-0002-3013-4881
Paolo Sassone-CorsiCenter for Epigenetics and Metabolism; U1233 INSERM; Department of Biological Chemistry, School of Medicine, University of California, Irvine (UCI), Irvine, CA, USA. psc@hs.uci.edu grecoc@hs.uci.edu.ORCID 0000-0001-7091-3954
Inserm · FRUniversity of California, Irvine · USKyoto Pharmaceutical University · JPBaylor College of Medicine · USLudwig-Maximilians-Universität München · DE

Funding

Uncover Strategies Used By Biological SystemsP50GM076516 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI LANDER, ARTHUR D · 2007 to 2016
$25.1M
TRD4: Phasor analysisP41GM103540 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI GRATTON, ENRICO · 2012 to 2020
$12.5M
CARCINOGENESIST32CA009054 · NCI · UNIVERSITY OF CALIFORNIA-IRVINE · PI EDINGER, AIMEE L, FRUMAN, DAVID ALEXANDER · 1985 to 2025
$8.6M
Bioinformatics Tools for Circadian BiologyR01GM123558 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI Pierre Baldi · 2017 to 2026
$2.4M
Rewiring the Circadian Clock by FastingR21AG053592 · NIA · UNIVERSITY OF CALIFORNIA-IRVINE · PI SASSONE-CORSI, PAOLO · 2017 to 2018
$425k
Communicating Clocks: Unraveling the nutritional link between the gut microbiome and liver reprogrammingR21DK114652 · NIDDK · UNIVERSITY OF CALIFORNIA-IRVINE · PI SASSONE-CORSI, PAOLO · 2017 to 2018
$425k
Dissecting the autonomy of the liver circadian clockF32DK121425 · NIDDK · UNIVERSITY OF CALIFORNIA-IRVINE · PI KORONOWSKI, KEVIN B · 2019 to 2021
$195k
Regulation of pre-ribosomal RNA by the Circadian ClockF31GM117942 · NIGMS · UNIVERSITY OF CALIFORNIA-IRVINE · PI CERVANTES, MARLENE · 2018 to 2019
$72k
Medical Research Council MR/S031812/1NCI NIH HHS T32 CA009054NIA NIH HHS R21 AG053592NIDDK NIH HHS F32 DK121425NIDDK NIH HHS R21 DK114652NIGMS NIH HHS F31 GM117942NIGMS NIH HHS P41 GM103540NIGMS NIH HHS P50 GM076516NIGMS NIH HHS R01 GM123558
6 · The paper itself

Abstract

Circadian gene expression driven by transcription activators CLOCK and BMAL1 is intimately associated with dynamic chromatin remodeling. However, how cellular metabolism directs circadian chromatin remodeling is virtually unexplored. We report that the S-adenosylhomocysteine (SAH) hydrolyzing enzyme adenosylhomocysteinase (AHCY) cyclically associates to CLOCK-BMAL1 at chromatin sites and promotes circadian transcriptional activity. SAH is a potent feedback inhibitor of S-adenosylmethionine (SAM)-dependent methyltransferases, and timely hydrolysis of SAH by AHCY is critical to sustain methylation reactions. We show that AHCY is essential for cyclic H3K4 trimethylation, genome-wide recruitment of BMAL1 to chromatin, and subsequent circadian transcription. Depletion or targeted pharmacological inhibition of AHCY in mammalian cells markedly decreases the amplitude of circadian gene expression. In mice, pharmacological inhibition of AHCY in the hypothalamus alters circadian locomotor activity and rhythmic transcription within the suprachiasmatic nucleus. These results reveal a previously unappreciated connection between cellular metabolism, chromatin dynamics, and circadian regulation.

Indexed as

AdenosylhomocysteinaseChromatin Assembly and DisassemblyCircadian ClocksMethionineAnimalsARNTL Transcription FactorsChromatinCircadian RhythmCLOCK ProteinsMiceS-AdenosylhomocysteineAdenosylhomocysteinaseARNTL Transcription FactorsBmal1 protein, mouseChromatinClock protein, mouseCLOCK ProteinsMethionineS-Adenosylhomocysteine

Identifiers

PMID33328229
PMCPMC7744083
OpenAlexW3111653477

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.