Evidence map›Paper›PMID 33327946›Full record

ArticleBMC infectious diseases2020

Genomic and phenotypic characterisation of invasive neonatal and colonising group B Streptococcus isolates from Slovenia, 2001-2018.

Tina Perme, Daniel Golparian, Maja Bombek Ihan, Andrej Rojnik, Miha Lučovnik, Lilijana Kornhauser Cerar, Petja Fister, Jana Lozar Krivec, Štefan Grosek, Alojz Ihan and 2 more

Open access · goldAbstract read
In one paragraph

Article in BMC infectious diseases, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers, 1 of them a synthesis that pooled it.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed, 1 pooled it
2.2field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 1 synthesis or guideline pooled it, 22 citations in OpenAlex.

  1. Pooled it
  2. Article
  3. Not all Group BFrontiers in cellular and infection microbiology · 2026
    Article
  4. Review
  5. Article
  6. Genomic characterization of group BMicrobial genomics · 2025
    Article
  7. Article
  8. Macrophage polarization duringFrontiers in microbiology · 2023
    Article
  9. Article
  10. Review
  11. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

12 authors at 4 institutions in 2 countries.

Tina PermeDepartment of Perinatology, University Medical Centre Ljubljana, Ljubljana, Slovenia.
Daniel GolparianWHO Collaborating Centre for Gonorrhoea and other STIs, National Reference Laboratory for STIs, Department of Laboratory Medicine, Microbiology, Örebro University, SE-70185, Örebro, Sweden.
Maja Bombek IhanNational Laboratory for Health, Environment and Food, Maribor, Slovenia.
Andrej RojnikNational Laboratory for Health, Environment and Food, Maribor, Slovenia.
Miha LučovnikDepartment of Perinatology, University Medical Centre Ljubljana, Ljubljana, Slovenia.
Lilijana Kornhauser CerarDepartment of Perinatology, University Medical Centre Ljubljana, Ljubljana, Slovenia.
Petja FisterDepartment of Neonatology, Division of Pediatrics, University Medical Centre Ljubljana, Ljubljana, Slovenia.
Jana Lozar KrivecDepartment of Neonatology, Division of Pediatrics, University Medical Centre Ljubljana, Ljubljana, Slovenia.
Štefan GrosekDepartment of Perinatology, University Medical Centre Ljubljana, Ljubljana, Slovenia.
Alojz IhanInstitute for Microbiology and Immunology, Medical Faculty, University of Ljubljana, Ljubljana, Slovenia.
Samo JevericaNational Laboratory for Health, Environment and Food, Maribor, Slovenia.
Magnus UnemoWHO Collaborating Centre for Gonorrhoea and other STIs, National Reference Laboratory for STIs, Department of Laboratory Medicine, Microbiology, Örebro University, SE-70185, Örebro, Sweden. magnus.unemo@regionorebrolan.se.ORCID http://orcid.org/0000-0003-1710-2081
Ljubljana University Medical Centre · SINational Laboratory of Health, Environment and Food · SIÖrebro University · SEUniversity of Ljubljana · SI

Funding

Foundation for Medical Research at Örebro University Hospital, Örebro, Sweden 2019Örebro County Council Research Committee, Örebro, Sweden 2018
6 · The paper itself

Abstract

backgroundGroup B Streptococcus (GBS) is the leading cause of invasive neonatal disease in the industrialized world. We aimed to genomically and phenotypically characterise invasive GBS isolates in Slovenia from 2001 to 2018 and contemporary colonising GBS isolates from screening cultures in 2018.

methodsGBS isolates from 101 patients (invasive isolates) and 70 pregnant women (colonising isolates) were analysed. Basic clinical characteristics of the patients were collected from medical records. Antimicrobial susceptibility and phenotypic capsular serotype were determined. Whole-genome sequencing was performed to assign multilocus sequence types (STs), clonal complexes (CCs), pathogenicity/virulence factors, including capsular genotypes, and genome-based phylogeny.

resultsAmong invasive neonatal disease patients, 42.6% (n = 43) were females, 41.5% (n = 39/94) were from preterm deliveries (< 37 weeks gestation), and 41.6% (n = 42) had early-onset disease (EOD). All isolates were susceptible to benzylpenicillin with low minimum inhibitory concentrations (MICs; ≤0.125 mg/L). Overall, 7 serotypes were identified (Ia, Ib, II-V and VIII); serotype III being the most prevalent (59.6%). Twenty-eight MLST STs were detected that clustered into 6 CCs. CC-17 was the most common CC overall (53.2%), as well as among invasive (67.3%) and non-invasive (32.9%) isolates (p < 0.001). CC-17 was more common among patients with late-onset disease (LOD) (81.4%) compared to EOD (47.6%) (p < 0.001). The prevalence of other CCs was 12.9% (CC-23), 11.1% (CC-12), 10.5% (CC-1), 8.2% (CC-19), and 1.8% (CC-498). Of all isolates, 2.3% were singletons.

conclusionsA high prevalence of hypervirulent CC-17 isolates, with low genomic diversity and characteristic profile of pathogenicity/virulence factors, was detected among invasive neonatal and colonising GBS isolates from pregnant women in Slovenia. This is the first genomic characterisation of GBS isolates in Slovenia and provides valuable microbiological and genomic baseline data regarding the invasive and colonising GBS population nationally. Continuous genomic surveillance of GBS infections is crucial to analyse the impact of IND prevention strategies on the population structure of GBS locally, nationally, and internationally.

Indexed as

GenotypeSerogroupAdultAnti-Bacterial AgentsFemaleHumansInfant, NewbornInfant, Newborn, DiseasesMaleMicrobial Sensitivity TestsMultilocus Sequence TypingPenicillin GPhylogenyPolymorphism, Single NucleotidePregnancyPregnancy Complications, InfectiousAnti-Bacterial AgentsPenicillin GCapsular typeGBSGroup B StreptococcusHypervirulent CC-17Molecular epidemiologyNeonatal infectionPathogenicity/virulence factorsSlovenia

Identifiers

PMID33327946
PMCPMC7739447
OpenAlexW3111995011

What OpenQuestion holds

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LicenceCC BY
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Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.