ArticleBMC genomics2020
Analysis of codon usage patterns in citrus based on coding sequence data.
Article in BMC genomics, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 22 papers.
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Who cites it
22 citing papers in PubMed.
- The Emerging JEV Genotype 5 Exhibits Distinct Codon Usage Characteristics.Pathogens (Basel, Switzerland) · 2026Article
- Codon usage of human DNA viruses and its similarity to certain host genes.Scientific reports · 2025Article
- Distinct codon usage signatures reflecting evolutionary and pathogenic adaptation in the Acinetobacter baumannii complex.European journal of clinical microbiology & infectious diseases : official publication of the European Society of Clinical Microbiology · 2025Article
- Codon Usage Bias of the Polyphenol Oxidase Genes inPlants (Basel, Switzerland) · 2025Article
- Article
- Lost in translation: conserved amino acid usage despite extreme codon bias in foraminifera.mBio · 2025Article
- Chloroplast Genome Diversity and Molecular Evolution in Hypericaceae: New Insights from ThreeInternational journal of molecular sciences · 2025Article
- Compare Analysis of Codon Usage Bias of Nuclear Genome in Eight Sapindaceae Species.International journal of molecular sciences · 2024Article
- Selection on synonymous codon usage in soybean (Glycine max) WRKY genes.Scientific reports · 2024Article
- Comparative analysis of codon usage patterns in 16 chloroplast genomes of suborder Halimedineae.BMC genomics · 2024Article
- Bioinformatic Analysis of Codon Usage Bias of HSP20 Genes in Four Cruciferous Species.Plants (Basel, Switzerland) · 2024Article
- The complete chloroplast genome of the halophyte flowering plant Suaeda monoica from Jeddah, Saudi Arabia.Molecular biology reports · 2024Article
- Analysis of codon usage patterns in 48 Aconitum species.BMC genomics · 2023Article
- Article
- The genome of Candidatus phytoplasma ziziphi provides insights into their biological characteristics.BMC plant biology · 2023Article
- Article
- Codon usage bias in chloroplast genes implicate adaptive evolution of four ginger species.Frontiers in plant science · 2023Article
- Article
- Analysis of codon usage bias of WRKY transcription factors in Helianthus annuus.BMC genomic data · 2022Article
- Codon usage patterns across seven Rosales species.BMC plant biology · 2022Article
Corrections and comments
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Authors and funding
6 authors.
Funding
Abstract
backgroundCodon usage is an important determinant of gene expression levels that can help us understand codon biology, evolution and mRNA translation of species. The majority of previous codon usage studies have focused on single species analysis, although few studies have focused on the species within the same genus. In this study, we proposed a multispecies codon usage analysis workflow to reveal the genetic features and correlation in citrus.
resultsOur codon usage analysis workflow was based on the GC content, GC plot, and relative synonymous codon usage value of each codon in 8 citrus species. This approach allows for the comparison of codon usage bias of different citrus species. Next, we performed cluster analysis and obtained an overview of the relationship in citrus. However, traditional methods cannot conduct quantitative analysis of the correlation. To further estimate the correlation among the citrus species, we used the frequency profile to construct feature vectors of each species. The Pearson correlation coefficient was used to quantitatively analyze the distance among the citrus species. This result was consistent with the cluster analysis.
conclusionsOur findings showed that the citrus species are conserved at the genetic level and demonstrated the existing genetic evolutionary relationship in citrus. This work provides new insights into codon biology and the evolution of citrus and other plant species.
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