Evidence map›Paper›PMID 33321963›Full record

ArticleCancers2020

Comprehensive Analysis of SWI/SNF Inactivation in Lung Adenocarcinoma Cell Models.

Paola Peinado, Alvaro Andrades, Marta Cuadros, Maria Isabel Rodriguez, Isabel F Coira, Daniel J Garcia, Juan Carlos Álvarez-Perez, Carlos Baliñas-Gavira, Alberto M Arenas, Juan Rodrigo Patiño-Mercau and 6 more

Open access · goldAbstract read
In one paragraph

Article in Cancers, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 8 papers.

0numbers the graph read from it
0cells of the map it votes in
8citing papers in PubMed
0.8field-weighted citation impact, top 30% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

8 citing papers in PubMed, 11 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 6 institutions in 2 countries.

Paola PeinadoDepartment of Biochemistry and Molecular Biology I, University of Granada, 18071 Granada, Spain.
Alvaro AndradesDepartment of Biochemistry and Molecular Biology I, University of Granada, 18071 Granada, Spain.ORCID 0000-0001-9042-8964
Marta CuadrosGENYO, Centre for Genomics and Oncological Research, Pfizer/University of Granada/Andalusian Regional Government, 18016 Granada, Spain.
Maria Isabel RodriguezGENYO, Centre for Genomics and Oncological Research, Pfizer/University of Granada/Andalusian Regional Government, 18016 Granada, Spain.ORCID 0000-0002-2270-0070
Isabel F CoiraSchool of Pharmaceutical Sciences, University of Geneva, 1211 Geneva, Switzerland.ORCID 0000-0003-3368-4691
Daniel J GarciaGENYO, Centre for Genomics and Oncological Research, Pfizer/University of Granada/Andalusian Regional Government, 18016 Granada, Spain.ORCID 0000-0001-5611-534X
Juan Carlos Álvarez-PerezDepartment of Biochemistry and Molecular Biology I, University of Granada, 18071 Granada, Spain.ORCID 0000-0001-6396-311X
Carlos Baliñas-GaviraDepartment of Biochemistry and Molecular Biology I, University of Granada, 18071 Granada, Spain.
Alberto M ArenasDepartment of Biochemistry and Molecular Biology I, University of Granada, 18071 Granada, Spain.ORCID 0000-0002-5995-2968
Juan Rodrigo Patiño-MercauDepartment of Biochemistry and Molecular Biology I, University of Granada, 18071 Granada, Spain.ORCID 0000-0002-4989-5613
Juan Sanjuan-HidalgoGENYO, Centre for Genomics and Oncological Research, Pfizer/University of Granada/Andalusian Regional Government, 18016 Granada, Spain.ORCID 0000-0002-5798-1028
Octavio A RomeroGenes and Cancer Group, Cancer Epigenetics and Biology Program (PEBC), Bellvitge Biomedical Research Institute (IDIBELL), Hospitalet de Llobregat, 08908 Barcelona, Spain.
Luis M MontuengaSolid Tumors Program, Centro de Investigación Médica Aplicada and Department of Pathology, Anatomy and Physiology, University of Navarra Pamplona, 31009 Pamplona, Spain.ORCID 0000-0002-8739-1387
Julian CarreteroDepartment of Physiology, University of Valencia, 46100 Burjassot, Valencia, Spain.
Montserrat Sanchez-CespedesGenes and Cancer Group, Cancer Epigenetics and Biology Program (PEBC), Bellvitge Biomedical Research Institute (IDIBELL), Hospitalet de Llobregat, 08908 Barcelona, Spain.
Pedro P MedinaDepartment of Biochemistry and Molecular Biology I, University of Granada, 18071 Granada, Spain.ORCID 0000-0002-7834-7093
Universidad de Granada · ESInstitut d'Investigació Biomédica de Bellvitge · ESNavarre Institute of Health Research · ESPfizer-University of Granada-Junta de Andalucía Centre for Genomics and Oncological Research · ESUniversitat de València · ESUniversity of Geneva · CH

Funding

Consejería de Economía, Innovación, Ciencia y Empleo, Junta de Andalucía Pl-0245-2017, CS2016-3, P12-BIO1655European Comission H2020-MSCA-IF-2018 #837897Foundation for Biomedicine Research on Eastern Andalusia (FIBAO) NAFundación Benéfica Anticáncer Santa Cándida y San Francisco Javier NAFundación Científica Asociación Española Contra el Cáncer GCB14-2170Instituto de Salud Carlos III PI19/00098International Association for the Study of Lung Cancer NALa Caixa Foundation LCF/BQ/DE15/10360019Ministerio de Economía y Competitividad SAF2015-67919-RMinisterio de Educación, Cultura y Deporte FPU17/00067, BES-2013-064596, FPU17/01258, FPU18/03709
6 · The paper itself

Abstract

Mammalian SWI/SNF (SWitch/Sucrose Non-Fermentable) complexes are ATP-dependent chromatin remodelers whose subunits have emerged among the most frequently mutated genes in cancer. Studying SWI/SNF function in cancer cell line models has unveiled vulnerabilities in SWI/SNF-mutant tumors that can lead to the discovery of new therapeutic drugs. However, choosing an appropriate cancer cell line model for SWI/SNF functional studies can be challenging because SWI/SNF subunits are frequently altered in cancer by various mechanisms, including genetic alterations and post-transcriptional mechanisms. In this work, we combined genomic, transcriptomic, and proteomic approaches to study the mutational status and the expression levels of the SWI/SNF subunits in a panel of 38 lung adenocarcinoma (LUAD) cell lines. We found that the SWI/SNF complex was mutated in more than 76% of our LUAD cell lines and there was a high variability in the expression of the different SWI/SNF subunits. These results underline the importance of the SWI/SNF complex as a tumor suppressor in LUAD and the difficulties in defining altered and unaltered cell models for the SWI/SNF complex. These findings will assist researchers in choosing the most suitable cellular models for their studies of SWI/SNF to bring all of its potential to the development of novel therapeutic applications.

Indexed as

cell modelsepigeneticslung adenocarcinomalung cancermulti-omicsSWI/SNF complex

Identifiers

PMID33321963
PMCPMC7763689
OpenAlexW3111276357

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.