Evidence map›Paper›PMID 33320887›Full record

ArticlePLoS computational biology2020

Defect patterns on the curved surface of fish retinae suggest a mechanism of cone mosaic formation.

Hayden Nunley, Mikiko Nagashima, Kamirah Martin, Alcides Lorenzo Gonzalez, Sachihiro C Suzuki, Declan A Norton, Rachel O L Wong, Pamela A Raymond, David K Lubensky

Open access · goldAbstract read
In one paragraph

Article in PLoS computational biology, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.6field-weighted citation impact, top 37% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 12 citations in OpenAlex.

  1. Article
  2. Proceedings of the National Academy of Sciences of the United States of America · 2024
    Article
  3. The mechanical forces that shape our senses.Development (Cambridge, England) · 2022
    Review
  4. Review
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 2 countries.

Hayden NunleyBiophysics Program, University of Michigan, Ann Arbor, Michigan, United States of America.ORCID 0000-0002-4634-9422
Mikiko NagashimaDepartment of Ophthalmology and Visual Sciences, University of Michigan, Ann Arbor, Michigan, United States of America.ORCID 0000-0003-0993-0012
Kamirah MartinBiophysics Program, University of Michigan, Ann Arbor, Michigan, United States of America.ORCID 0000-0001-7848-6352
Alcides Lorenzo GonzalezNeuroscience Graduate Program, University of Michigan, Ann Arbor, Michigan, United States of America.ORCID 0000-0002-8633-2692
Sachihiro C SuzukiDepartment of Biological Structure, University of Washington, Seattle, Washington, United States of America.
Declan A NortonDepartment of Physics, Trinity College Dublin, Dublin, Ireland.ORCID 0000-0001-5383-0874
Rachel O L WongDepartment of Biological Structure, University of Washington, Seattle, Washington, United States of America.ORCID 0000-0001-5089-6296
Pamela A RaymondDepartment of Molecular, Cellular, and Developmental Biology, University of Michigan, Ann Arbor, Michigan, United States of America.
David K LubenskyDepartment of Physics, University of Michigan, Ann Arbor, Michigan, United States of America.
University of Michigan · USUniversity of Washington · USTrinity College Dublin · IE

Funding

VIVARIUM MODULEP30EY007003 · NEI · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI David Antonetti · 1987 to 2026
$17.6M
NEI NIH HHS P30 EY007003
6 · The paper itself

Abstract

The outer epithelial layer of zebrafish retinae contains a crystalline array of cone photoreceptors, called the cone mosaic. As this mosaic grows by mitotic addition of new photoreceptors at the rim of the hemispheric retina, topological defects, called "Y-Junctions", form to maintain approximately constant cell spacing. The generation of topological defects due to growth on a curved surface is a distinct feature of the cone mosaic not seen in other well-studied biological patterns like the R8 photoreceptor array in the Drosophila compound eye. Since defects can provide insight into cell-cell interactions responsible for pattern formation, here we characterize the arrangement of cones in individual Y-Junction cores as well as the spatial distribution of Y-junctions across entire retinae. We find that for individual Y-junctions, the distribution of cones near the core corresponds closely to structures observed in physical crystals. In addition, Y-Junctions are organized into lines, called grain boundaries, from the retinal center to the periphery. In physical crystals, regardless of the initial distribution of defects, defects can coalesce into grain boundaries via the mobility of individual particles. By imaging in live fish, we demonstrate that grain boundaries in the cone mosaic instead appear during initial mosaic formation, without requiring defect motion. Motivated by this observation, we show that a computational model of repulsive cell-cell interactions generates a mosaic with grain boundaries. In contrast to paradigmatic models of fate specification in mostly motionless cell packings, this finding emphasizes the role of cell motion, guided by cell-cell interactions during differentiation, in forming biological crystals. Such a route to the formation of regular patterns may be especially valuable in situations, like growth on a curved surface, where the resulting long-ranged, elastic, effective interactions between defects can help to group them into grain boundaries.

Indexed as

AnimalsCell CommunicationCell DifferentiationComputer SimulationRetinal Cone Photoreceptor CellsZebrafish

Identifiers

PMID33320887
PMCPMC7771878
OpenAlexW3112499835

What OpenQuestion holds

Textmetadata
LicenceCC BY
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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.