Evidence map›Paper›PMID 33319743›Full record

ArticleeLife2020

Primary and promiscuous functions coexist during evolutionary innovation through whole protein domain acquisitions.

José Antonio Escudero, Aleksandra Nivina, Harry E Kemble, Céline Loot, Olivier Tenaillon, Didier Mazel

Abstract read
In one paragraph

Article in eLife, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 7 papers.

0numbers the graph read from it
0cells of the map it votes in
7citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

7 citing papers in PubMed.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

6 authors.

José Antonio EscuderoInstitut Pasteur, Unité de Plasticité du Génome Bactérien, Département Génomes et Génétique, Paris, France.ORCID 0000-0001-8552-2956
Aleksandra NivinaInstitut Pasteur, Unité de Plasticité du Génome Bactérien, Département Génomes et Génétique, Paris, France.ORCID 0000-0002-1802-3724
Harry E KembleInfection, Antimicrobials, Modelling, Evolution, INSERM, UMR 1137, Université Paris Diderot, Université Paris Nord, Paris, France.ORCID 0000-0003-1480-5873
Céline LootInstitut Pasteur, Unité de Plasticité du Génome Bactérien, Département Génomes et Génétique, Paris, France.ORCID 0000-0003-3774-249X
Olivier TenaillonInfection, Antimicrobials, Modelling, Evolution, INSERM, UMR 1137, Université Paris Diderot, Université Paris Nord, Paris, France.ORCID 0000-0002-3796-1601
Didier MazelInstitut Pasteur, Unité de Plasticité du Génome Bactérien, Département Génomes et Génétique, Paris, France.ORCID 0000-0001-6482-6002

Funding

Agence Nationale de la Recherche ANR-10-LABX-62-IBEIDAgence Nationale de la Recherche ANR-12- 897 BLAN-DynamINTCentre National de la Recherche Scientifique CNRS-UMR3525Comunidad de Madrid 2016-T1/BIO-1105EU-FP7 FET 612146EU FP7 HEALTH 282004EU-MSC Actions PIEF-GA-2011-303022European Research Council StG-803375European Union 7th Framework Programme 310944Fondation pour la Recherche Médicale DBF20160635736Fondation pour la Recherche Médicale EQU201903007848Fondation pour la Recherche Médicale FDT20150532465H2020 Marie Skłodowska-Curie Actions PIEF-GA-2011-303022Ministerio de Ciencia e Innovación BIO2017-85056-PMinisterio de Ciencia, Innovacion y Universidades de Espana BIO2017-85056-PPierre and Marie Curie University FP-7-PEOPLE2011-IEFPierre and Marie Curie University ICADIGE
6 · The paper itself

Abstract

Molecular examples of evolutionary innovation are scarce and generally involve point mutations. Innovation can occur through larger rearrangements, but here experimental data is extremely limited. Integron integrases innovated from double-strand- toward single-strand-DNA recombination through the acquisition of the I2 α-helix. To investigate how this transition was possible, we have evolved integrase IntI1 to what should correspond to an early innovation state by selecting for its ancestral activity. Using synonymous alleles to enlarge sequence space exploration, we have retrieved 13 mutations affecting both I2 and the multimerization domains of IntI1. We circumvented epistasis constraints among them using a combinatorial library that revealed their individual and collective fitness effects. We obtained up to 10

Indexed as

Biological EvolutionAnimalsEpistasis, GeneticHigh-Throughput Nucleotide SequencingHumansIntegrasesProtein DomainsIntegrasesdomain acquisitionE. colievolutionevolutionary biologyinnovationintegraseintegronrecombination

Identifiers

PMID33319743
PMCPMC7790495

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.