Evidence map›Paper›PMID 33318506›Full record

ArticleNature communications2020

Isolation of a member of the candidate phylum 'Atribacteria' reveals a unique cell membrane structure.

Taiki Katayama, Masaru K Nobu, Hiroyuki Kusada, Xian-Ying Meng, Naoki Hosogi, Katsuyuki Uematsu, Hideyoshi Yoshioka, Yoichi Kamagata, Hideyuki Tamaki

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 39 papers.

0numbers the graph read from it
0cells of the map it votes in
39citing papers in PubMed
5.3field-weighted citation impact, top 3% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

39 citing papers in PubMed, 101 citations in OpenAlex.

  1. Article
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  4. A diverse Palaeoproterozoic microbial ecosystem implies early eukaryogenesis.Philosophical transactions of the Royal Society of London. Series B, Biological sciences · 2025
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  10. International journal of systematic and evolutionary microbiology · 2024
    Article
  11. Review
  12. The dynamic history of prokaryotic phyla: discovery, diversity and division.International journal of systematic and evolutionary microbiology · 2024
    Review
  13. Article
  14. Article
  15. Article
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4 · The record

Corrections and comments

5 · Who and what money

Authors and funding

9 authors at 3 institutions in 1 country.

Taiki Katayama *Geomicrobiology Research Group, Research Institute for Geo-Resources and Environment, Geological Survey of Japan, National Institute of Advanced Industrial Science and Technology (AIST), Central 7, 1-1-1 Higashi, Tsukuba, Ibaraki, 305-8567, Japan.ORCID http://orcid.org/0000-0003-2964-7628
Masaru K Nobu *Bioproduction Research Institute, Central 6-10, 1-1-1 Higashi, AIST, Tsukuba, Ibaraki, 305-8566, Japan.ORCID http://orcid.org/0000-0002-0046-9306
Hiroyuki KusadaBioproduction Research Institute, Central 6-10, 1-1-1 Higashi, AIST, Tsukuba, Ibaraki, 305-8566, Japan.
Xian-Ying MengBioproduction Research Institute, Central 6-10, 1-1-1 Higashi, AIST, Tsukuba, Ibaraki, 305-8566, Japan.
Naoki HosogiEM Application Department, EM Business Unit, JEOL, Ltd., 3-1-2 Musashino, Akishima, Tokyo, 196-8558, Japan.
Katsuyuki UematsuDepartment of Marine and Earth Sciences, Marine Work Japan Ltd., 3-54-1 Oppamahigashi, Yokosuka, Kanagawa, 237-0063, Japan.
Hideyoshi YoshiokaGeomicrobiology Research Group, Research Institute for Geo-Resources and Environment, Geological Survey of Japan, National Institute of Advanced Industrial Science and Technology (AIST), Central 7, 1-1-1 Higashi, Tsukuba, Ibaraki, 305-8567, Japan.
Yoichi KamagataBioproduction Research Institute, Central 6-10, 1-1-1 Higashi, AIST, Tsukuba, Ibaraki, 305-8566, Japan. y.kamagata@aist.go.jp.
Hideyuki TamakiBioproduction Research Institute, Central 6-10, 1-1-1 Higashi, AIST, Tsukuba, Ibaraki, 305-8566, Japan. tamaki-hideyuki@aist.go.jp.ORCID http://orcid.org/0000-0001-9208-1247
National Institute of Advanced Industrial Science and Technology · JPGeological Survey of Japan · JPJEOL (Japan) · JP

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

A key feature that differentiates prokaryotic cells from eukaryotes is the absence of an intracellular membrane surrounding the chromosomal DNA. Here, we isolate a member of the ubiquitous, yet-to-be-cultivated phylum 'Candidatus Atribacteria' (also known as OP9) that has an intracytoplasmic membrane apparently surrounding the nucleoid. The isolate, RT761, is a subsurface-derived anaerobic bacterium that appears to have three lipid membrane-like layers, as shown by cryo-electron tomography. Our observations are consistent with a classical gram-negative structure with an additional intracytoplasmic membrane. However, further studies are needed to provide conclusive evidence for this unique intracellular structure. The RT761 genome encodes proteins with features that might be related to the complex cellular structure, including: N-terminal extensions in proteins involved in important processes (such as cell-division protein FtsZ); one of the highest percentages of transmembrane proteins among gram-negative bacteria; and predicted Sec-secreted proteins with unique signal peptides. Physiologically, RT761 primarily produces hydrogen for electron disposal during sugar degradation, and co-cultivation with a hydrogen-scavenging methanogen improves growth. We propose RT761 as a new species, Atribacter laminatus gen. nov. sp. nov. and a new phylum, Atribacterota phy. nov.

Indexed as

Bacteria, AnaerobicBase CompositionCell Membrane StructuresDNA, BacterialFatty AcidsFermentationGenome, BacterialGeologic SedimentsJapanPhylogenyRhizobiaceaeRNA, Ribosomal, 16SSequence Analysis, DNADNA, BacterialFatty AcidsRNA, Ribosomal, 16S

Identifiers

PMID33318506
PMCPMC7736352
OpenAlexW3112654886

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.