Evidence map›Paper›PMID 33318494›Full record

ArticleNature communications2020

Activation of the IRE1 RNase through remodeling of the kinase front pocket by ATP-competitive ligands.

Elena Ferri, Adrien Le Thomas, Heidi Ackerly Wallweber, Eric S Day, Benjamin T Walters, Susan E Kaufman, Marie-Gabrielle Braun, Kevin R Clark, Maureen H Beresini, Kyle Mortara and 8 more

Open access · goldAbstract read
In one paragraph

Article in Nature communications, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 23 papers.

0numbers the graph read from it
0cells of the map it votes in
23citing papers in PubMed
2.4field-weighted citation impact, top 11% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

23 citing papers in PubMed, 41 citations in OpenAlex.

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  11. Dual RNase activity of IRE1 as a target for anticancer therapies.Journal of cell communication and signaling · 2023
    Review
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  15. Selective inhibitors of SARM1 targeting an allosteric cysteine in the autoregulatory ARM domain.Proceedings of the National Academy of Sciences of the United States of America · 2022
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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

18 authors at 3 institutions in 3 countries.

Elena FerriStructural Biology, Genentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Adrien Le ThomasCancer Immunology, Genentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Heidi Ackerly WallweberStructural Biology, Genentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Eric S DayPharmaceutical Development, Genentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Benjamin T WaltersBiochemical and Cellular Pharmacology, Genentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.ORCID 0000-0001-5400-0696
Susan E KaufmanBiochemical and Cellular Pharmacology, Genentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Marie-Gabrielle BraunDiscovery Chemistry, Genentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Kevin R ClarkBiochemical and Cellular Pharmacology, Genentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Maureen H BeresiniBiochemical and Cellular Pharmacology, Genentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Kyle MortaraBioMolecular Resources, Genentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Yung-Chia A ChenCancer Immunology, Genentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Breanna CanterDiscovery Chemistry, Genentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Wilson PhungMicrochemistry, Proteomics & Lipidomics, Genentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Peter S LiuMicrochemistry, Proteomics & Lipidomics, Genentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Alfred LammensProteros Biostructures GmbH, Bunsenstr. 7a, D - 82152, Martinsried, Germany.
Avi AshkenaziCancer Immunology, Genentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA.
Joachim RudolphDiscovery Chemistry, Genentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA. rudolph.joachim@gene.com.ORCID 0000-0002-0806-6106
Weiru WangStructural Biology, Genentech, Inc., 1 DNA Way, South San Francisco, CA, 94080, USA. wang.weiru@gene.com.ORCID 0000-0001-8845-301X
PhysioGenix (United States) · USGenedata (Switzerland) · CHGene Therapy Laboratory · FR

Funding

No grant is acknowledged in the PubMed record.

6 · The paper itself

Abstract

Inositol-Requiring Enzyme 1 (IRE1) is an essential component of the Unfolded Protein Response. IRE1 spans the endoplasmic reticulum membrane, comprising a sensory lumenal domain, and tandem kinase and endoribonuclease (RNase) cytoplasmic domains. Excess unfolded proteins in the ER lumen induce dimerization and oligomerization of IRE1, triggering kinase trans-autophosphorylation and RNase activation. Known ATP-competitive small-molecule IRE1 kinase inhibitors either allosterically disrupt or stabilize the active dimeric unit, accordingly inhibiting or stimulating RNase activity. Previous allosteric RNase activators display poor selectivity and/or weak cellular activity. In this study, we describe a class of ATP-competitive RNase activators possessing high selectivity and strong cellular activity. This class of activators binds IRE1 in the kinase front pocket, leading to a distinct conformation of the activation loop. Our findings reveal exquisitely precise interdomain regulation within IRE1, advancing the mechanistic understanding of this important enzyme and its investigation as a potential small-molecule therapeutic target.

Indexed as

Adenosine TriphosphateAllosteric SiteCrystallography, X-RayEndoplasmic ReticulumEndoribonucleasesGene Knockout TechniquesHumansLigandsModels, MolecularPhosphorylationProtein ConformationProtein FoldingProtein Kinase InhibitorsProtein MultimerizationProtein Serine-Threonine KinasesRibonucleasesAdenosine TriphosphateEndoribonucleasesERN1 protein, humanLigandsProtein Kinase InhibitorsProtein Serine-Threonine KinasesRibonucleases

Identifiers

PMID33318494
PMCPMC7736581
OpenAlexW3113149839

What OpenQuestion holds

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LicenceCC BY
Read underepoch 390

Registered trials

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Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.