Evidence map›Paper›PMID 33316845›Full record

ArticleThe Plant journal : for cell and molecular biology2021

Computational prediction method to decipher receptor-glycoligand interactions in plant immunity.

Irene Del Hierro, Hugo Mélida, Caroline Broyart, Julia Santiago, Antonio Molina

Open access · hybridAbstract read
In one paragraph

Article in The Plant journal : for cell and molecular biology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 16 papers.

0numbers the graph read from it
0cells of the map it votes in
16citing papers in PubMed
3.7field-weighted citation impact, top 7% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

16 citing papers in PubMed, 26 citations in OpenAlex.

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4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 2 institutions in 2 countries.

Irene Del HierroCentro de Biotecnología y Genómica de Plantas (CBGP), Universidad Politécnica de Madrid (UPM), Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus de Montegancedo-UPM, 28223, Pozuelo de Alarcón, Madrid, Spain.
Hugo MélidaCentro de Biotecnología y Genómica de Plantas (CBGP), Universidad Politécnica de Madrid (UPM), Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus de Montegancedo-UPM, 28223, Pozuelo de Alarcón, Madrid, Spain.ORCID 0000-0003-1792-0113
Caroline BroyartDépartement de Biologie Moléculaire Végétale (DBMV), University of Lausanne (UNIL), Biophore Building, UNIL Sorge, CH-1015, Lausanne, Switzerland.
Julia SantiagoDépartement de Biologie Moléculaire Végétale (DBMV), University of Lausanne (UNIL), Biophore Building, UNIL Sorge, CH-1015, Lausanne, Switzerland.ORCID 0000-0002-5765-6495
Antonio MolinaCentro de Biotecnología y Genómica de Plantas (CBGP), Universidad Politécnica de Madrid (UPM), Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Campus de Montegancedo-UPM, 28223, Pozuelo de Alarcón, Madrid, Spain.ORCID 0000-0003-3137-7938
Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria · ESUniversity of Lausanne · CH

Funding

European Research Council 716358Swiss National Science Foundation 31003A_173101
6 · The paper itself

Abstract

Microbial and plant cell walls have been selected by the plant immune system as a source of microbe- and plant damage-associated molecular patterns (MAMPs/DAMPs) that are perceived by extracellular ectodomains (ECDs) of plant pattern recognition receptors (PRRs) triggering immune responses. From the vast number of ligands that PRRs can bind, those composed of carbohydrate moieties are poorly studied, and only a handful of PRR/glycan pairs have been determined. Here we present a computational screening method, based on the first step of molecular dynamics simulation, that is able to predict putative ECD-PRR/glycan interactions. This method has been developed and optimized with Arabidopsis LysM-PRR members CERK1 and LYK4, which are involved in the perception of fungal MAMPs, chitohexaose (1,4-β-d-(GlcNAc)

Indexed as

ArabidopsisArabidopsis ProteinsOligosaccharidesPlant DiseasesPlant ImmunityReceptors, Pattern RecognitionSignal TransductionArabidopsis ProteinschitohexaoselaminarihexaoseOligosaccharidesReceptors, Pattern RecognitionArabidopsis thalianaglycanimmunityisothermal titration calorimetryLysM domainmolecular dynamicspattern recognition receptortechnical advance

Identifiers

PMID33316845
PMCPMC8048873
OpenAlexW3112998751

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.