Evidence map›Paper›PMID 33316429›Full record

ArticleInfection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases2021

Genome sequences of antibiotic-resistant Streptococcus suis strains isolated from human patients and diseased and asymptomatic pigs in Thailand.

Suganya Yongkiettrakul, Thidathip Wongsurawat, Piroon Jenjaroenpun, Daniel A Acheampong, Potjanee Srimanote, Krissana Maneerat, Wonnop Visessanguan, Intawat Nookaew

Open access · greenAbstract readComparative Study
In one paragraph

Article in Infection, genetics and evolution : journal of molecular epidemiology and evolutionary genetics in infectious diseases, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 11 papers.

0numbers the graph read from it
0cells of the map it votes in
11citing papers in PubMed
1.4field-weighted citation impact, top 16% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

11 citing papers in PubMed, 11 citations in OpenAlex.

  1. Article
  2. One health (Amsterdam, Netherlands) · 2025
    Review
  3. Isopropoxy Benzene Guanidine AmelioratesInternational journal of molecular sciences · 2023
    Article
  4. Article
  5. Microbial genomics · 2023
    Article
  6. Article
  7. Article
  8. InvasiveFrontiers in cellular and infection microbiology · 2023
    Article
  9. Review
  10. Non-Penicillin-SusceptiblePathogens (Basel, Switzerland) · 2021
    Article
  11. Genomic Characterization ofFrontiers in microbiology · 2021
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

8 authors at 6 institutions in 2 countries.

Suganya YongkiettrakulNational Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Pathum Thani, Thailand. Electronic address: suganya.yon@biotec.or.th.
Thidathip WongsurawatDepartment of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA; Division of Bioinformatics and Data Management for Research, Department of Research and Development, Faculty of Medicine, Siriraj Hospital, Mahidol University, Bangkok, Thailand.
Piroon JenjaroenpunDepartment of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA; Division of Bioinformatics and Data Management for Research, Department of Research and Development, Faculty of Medicine, Siriraj Hospital, Mahidol University, Bangkok, Thailand.
Daniel A AcheampongDepartment of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA; Joint Graduate Program in Bioinformatics, University of Arkansas at Little Rock and University of Arkansas for Medical Sciences, Little Rock, AR, USA.
Potjanee SrimanoteGraduate Program in Biomedical Sciences, Faculty of Allied Health Sciences, Thammasat University, Pathum Thani, Thailand.
Krissana ManeeratCollege of Alternative Medicine, Chandrakasem Rajabhat University, Bangkok, Thailand.
Wonnop VisessanguanNational Center for Genetic Engineering and Biotechnology, National Science and Technology Development Agency, Pathum Thani, Thailand.
Intawat NookaewDepartment of Biomedical Informatics, University of Arkansas for Medical Sciences, Little Rock, AR, USA. Electronic address: INookaew@uams.edu.
National Science and Technology Development Agency · THUniversity of Arkansas for Medical Sciences · USChandrakasem Rajabhat University · THMahidol University · THThammasat University · THUniversity of Arkansas at Little Rock · US

Funding

Understanding the Negative Prognostic Impact of Intraosseous Focal Lesions in Multiple MyelomaP20GM125503 · NIGMS · UNIV OF ARKANSAS FOR MED SCIS · PI Sanja Novak · 2018 to 2026
$23.0M
NIGMS NIH HHS P20 GM125503
6 · The paper itself

Abstract

Streptococcus suis, a zoonotic bacterial pathogen, has negative economic impacts on both intensive swine production and human health worldwide. Whole-genome sequencing and comparative genomic analysis have been widely used for comprehensive classification and investigation of the genetic basis of several S. suis strains obtained from distinct hosts in different geographic areas, revealing great genetic diversity of this zoonotic pathogen. In this study, whole-genome sequences of antibiotic-resistant S. suis strains isolated from human patients (2 strains), diseased pigs (4 strains), and asymptomatic pigs (3 strains) in Thailand were compared with known genomes of 1186 S. suis strains. Single-nucleotide polymorphism-based phylogenetic analysis indicated that the Thai-isolated S. suis strains have close genetic relatedness to S. suis strains isolated from Canada, China, Denmark, Netherlands, United Kingdom, and United States of America. The genome analysis revealed genes conferring antibiotic resistance (aad(6), ant(6)-Ia, ermB, tet(O), patB, and sat4) and gene clusters (aph(3')-IIIa and aac(6')-Ie-aph(2″)-Ia) associated with aminoglycoside, macrolide, and fluoroquinolone resistance in S. suis in Thailand. This work provides additional resources for future genomic epidemiology investigation of S. suis.

Indexed as

Genetic VariationGeographyPhylogenyAnimalsCanadaChinaDrug Resistance, MicrobialGenome-Wide Association StudyHumansImidoestersMicrobial Sensitivity TestsNetherlandsStreptococcal InfectionsStreptococcus suisSwineSwine DiseasesbuthiobateImidoestersAntibiotic resistanceSNP-based phylogeneticsStreptococcus suisWhole-genome sequencing

Identifiers

PMID33316429
PMCPMC8561417
OpenAlexW3112843944

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.