Evidence map›Paper›PMID 33315201›Full record

ArticleMethods in molecular biology (Clifton, N.J.)2021

MicroRNA Expression Profiling, Target Identification, and Validation in Chondrocytes.

Tomoki Chiba, Ryota Kurimoto, Takahide Matsushima, Yoshiaki Ito, Ryo Nakamichi, Martin Lotz, Hiroshi Asahara

Open access · greenAbstract read
In one paragraph

Article in Methods in molecular biology (Clifton, N.J.), 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 1 paper.

0numbers the graph read from it
0cells of the map it votes in
1citing papers in PubMed
0.5field-weighted citation impact, top 27% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

1 citing paper in PubMed, 1 citations in OpenAlex.

  1. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

7 authors at 3 institutions in 2 countries.

Tomoki ChibaDepartment of Systems BioMedicine, Tokyo Medical and Dental University (TMDU), Tokyo, Japan.
Ryota KurimotoDepartment of Systems BioMedicine, Tokyo Medical and Dental University (TMDU), Tokyo, Japan.
Takahide MatsushimaDepartment of Systems BioMedicine, Tokyo Medical and Dental University (TMDU), Tokyo, Japan.
Yoshiaki ItoDepartment of Systems BioMedicine, Tokyo Medical and Dental University (TMDU), Tokyo, Japan.
Ryo NakamichiDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA.
Martin LotzDepartment of Molecular Medicine, The Scripps Research Institute, La Jolla, CA, USA.
Hiroshi AsaharaDepartment of Systems BioMedicine, Tokyo Medical and Dental University (TMDU), Tokyo, Japan. asahara@scripps.edu.
The University of Tokyo · JPScripps Research Institute · USTokyo Medical and Dental University · JP

Funding

Transcriptional Regulation of ChondrogenesisR01AR050631 · NIAMS · SCRIPPS RESEARCH INSTITUTE, THE · PI ASAHARA, HIROSHI · 2004 to 2021
$5.8M
Transcription factor Mohawk in tendon and ligament degeneration and regenerationR01AR065379 · NIAMS · SCRIPPS RESEARCH INSTITUTE, THE · PI ASAHARA, HIROSHI · 2014 to 2018
$2.1M
NIAMS NIH HHS R01 AR050631NIAMS NIH HHS R01 AR065379
6 · The paper itself

Abstract

MicroRNAs (miRNAs) are a class of noncoding small RNAs, which play a critical role in various biological processes including musculoskeletal formation and arthritis pathogenesis via regulating target gene expressions, raising the potentially substantial effects on gene expression networks. Over 2000 miRNAs are encoded in the human genome and a single miRNA potentially targets hundreds of genes. To examine the expression and function of miRNAs in chondrocytes and arthritis pathogenesis, we describe the protocols for the current miRNA related experiments including miRNA expression profiling by (1) Next Generation Sequencing and by TaqMan Array system, (2) miRNA target prediction by TargetScan, (3) miRNA target screening by cell-based reporter library assay, and (4) miRNA and its target interaction by HITS-CLIP (high-throughput sequencing of RNAs isolated by cross-linking immunoprecipitation) in cartilage and chondrocyte research.

Indexed as

Gene Expression ProfilingRNA InterferenceTranscriptomeChondrocytesGene Expression RegulationGene LibraryGenes, ReporterHigh-Throughput Nucleotide SequencingHumansMicroRNAsRNA, MessengerMicroRNAsRNA, MessengerArthritisCartilageChondrocytesExpression profilingmiRNATarget validation

Identifiers

PMID33315201
PMCPMC7817244
OpenAlexW3112842994

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.