Evidence map›Paper›PMID 33314489›Full record

ArticleHuman mutation2021

Epidemiological and ES cell-based functional evaluation of BRCA2 variants identified in families with breast cancer.

Teresa Sullivan, Eswary Thirthagiri, Chan-Eng Chong, Stacey Stauffer, Susan Reid, Eileen Southon, Tiara Hassan, Aravind Ravichandran, Eldarina Wijaya, Joanna Lim and 14 more

Open access · greenAbstract read
In one paragraph

Article in Human mutation, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 5 papers.

0numbers the graph read from it
0cells of the map it votes in
5citing papers in PubMed
0.3field-weighted citation impact, top 42% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

5 citing papers in PubMed, 6 citations in OpenAlex.

  1. Review
  2. Genes · 2024
    Article
  3. Article
  4. Article
  5. Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

24 authors at 11 institutions in 5 countries.

Teresa SullivanMouse Cancer Genetics Program, Center for Cancer Research, National Cancer Institute, Frederick, MD, 21702, USA.
Eswary ThirthagiriMouse Cancer Genetics Program, Center for Cancer Research, National Cancer Institute, Frederick, MD, 21702, USA.
Chan-Eng ChongCancer Research Malaysia, Subang Jaya, Selangor, Malaysia.
Stacey StaufferMouse Cancer Genetics Program, Center for Cancer Research, National Cancer Institute, Frederick, MD, 21702, USA.
Susan ReidMouse Cancer Genetics Program, Center for Cancer Research, National Cancer Institute, Frederick, MD, 21702, USA.
Eileen SouthonMouse Cancer Genetics Program, Center for Cancer Research, National Cancer Institute, Frederick, MD, 21702, USA.
Tiara HassanCancer Research Malaysia, Subang Jaya, Selangor, Malaysia.
Aravind RavichandranNational Center for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, Karnataka, India.
Eldarina WijayaCancer Research Malaysia, Subang Jaya, Selangor, Malaysia.
Joanna LimCancer Research Malaysia, Subang Jaya, Selangor, Malaysia.
Nur Aishah Mohd TaibBreast Cancer Research Unit, UM Cancer Research Institute, University of Malaya Medical Center, Kuala Lumpur, Malaysia.
Farhana FadzliBreast Cancer Research Unit, UM Cancer Research Institute, University of Malaya Medical Center, Kuala Lumpur, Malaysia.
Cheng Har YipSubang Jaya Medical Center, Subang Jaya, Malaysia.
Mikael HartmanSaw Swee Hock School of Public Health, National University of Singapore and National University Health System, Singapore.
Jingmei LiGenome Institute of Singapore, Human Genetics, Singapore, Singapore.
Rob M van DamSaw Swee Hock School of Public Health, National University of Singapore and National University Health System, Singapore.
Susan L NorthMouse Cancer Genetics Program, Center for Cancer Research, National Cancer Institute, Frederick, MD, 21702, USA.
Ranabir DasNational Center for Biological Sciences, Tata Institute of Fundamental Research, Bangalore, Karnataka, India.
Douglas F EastonCentre for Cancer Genetic Epidemiology, University of Cambridge, Cambridge, UK.
Kajal BiswasMouse Cancer Genetics Program, Center for Cancer Research, National Cancer Institute, Frederick, MD, 21702, USA.
Soo-Hwang TeoCancer Research Malaysia, Subang Jaya, Selangor, Malaysia.
Shyam K SharanMouse Cancer Genetics Program, Center for Cancer Research, National Cancer Institute, Frederick, MD, 21702, USA.
SGBCC Investigators
MYBRCA Investigators
Cancer Research Malaysia · MYCenter for Cancer Research · USFrederick National Laboratory for Cancer Research · USNational University Health System · SGTata Institute of Fundamental Research · INGenome Institute of Singapore · SGNational Cancer Institute · USSubang Jaya Medical Centre · MYUniversity Malaya Medical Centre · MYUniversity of Cambridge · GBUniversity of Malaya · MY

Funding

Validation of, and therapeutic evaluation in ovarian cancer GEM modelsZIABC011737 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SHARAN, SHYAM · 2016 to 2025
$11.9M
Functional Analysis of Variants Identified in Human Breast Cancer SusceptibilityZIABC011181 · NCI · DIVISION OF BASIC SCIENCES - NCI · PI SHARAN, SHYAM · 2009 to 2025
$11.6M
Biomedical Research Council 05/1/21/19/425Intramural NIH HHS Z99 CA999999Intramural NIH HHS ZIA BC011181Wellcome Trust 203477/Z/16/ZWellcome Trust V203477/Z/16/Z
6 · The paper itself

Abstract

The discovery of high-risk breast cancer susceptibility genes, such as Breast cancer associated gene 1 (BRCA1) and Breast cancer associated gene 2 (BRCA2) has led to accurate identification of individuals for risk management and targeted therapy. The rapid decline in sequencing costs has tremendously increased the number of individuals who are undergoing genetic testing world-wide. However, given the significant differences in population-specific variants, interpreting the results of these tests can be challenging especially for novel genetic variants in understudied populations. Here we report the characterization of novel variants in the Malaysian and Singaporean population that consist of different ethnic groups (Malays, Chinese, Indian, and other indigenous groups). We have evaluated the functional significance of 14 BRCA2 variants of uncertain clinical significance by using multiple in silico prediction tools and examined their frequency in a cohort of 7840 breast cancer cases and 7928 healthy controls. In addition, we have used a mouse embryonic stem cell (mESC)-based functional assay to assess the impact of these variants on BRCA2 function. We found these variants to be functionally indistinguishable from wild-type BRCA2. These variants could fully rescue the lethality of Brca2-null mESCs and exhibited no sensitivity to six different DNA damaging agents including a poly ADP ribose polymerase inhibitor. Our findings strongly suggest that all 14 evaluated variants are functionally neutral. Our findings should be valuable in risk assessment of individuals carrying these variants.

Indexed as

Breast NeoplasmsAnimalsBRCA1 ProteinBRCA2 ProteinCohort StudiesFemaleGenes, BRCA2Genetic Predisposition to DiseaseGenetic TestingHumansMalaysiaMiceBRCA1 ProteinBRCA2 ProteinBRCA2 protein, humanBRCA2 protein, mouseBRCA2breast cancerES cell-based assayfunctional evaluationmolecular dynamic analysisvariants of uncertain clinical significance (VUS)

Identifiers

PMID33314489
PMCPMC7919386
OpenAlexW3112237223

What OpenQuestion holds

Textmetadata
LicenceTDM
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.