Evidence map›Paper›PMID 33314090›Full record

ArticleEuropean journal of immunology2021

Type-I Interferon assessment in 45 minutes using the FilmArray

Marine Mommert, Magali Perret, Matthew Hockin, Sébastien Viel, Alexandre Belot, Jean-Christophe Richard, Mehdi Mezidi, Jean-Baptiste Fassier, Etienne Javouhey, ANTOINE Study Group and 6 more

Open access · hybridAbstract read
In one paragraph

Article in European journal of immunology, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 6 papers.

0numbers the graph read from it
0cells of the map it votes in
6citing papers in PubMed
0.1field-weighted citation impact, top 43% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

6 citing papers in PubMed, 9 citations in OpenAlex.

  1. Article
  2. Review
  3. The type I interferonopathies: 10 years on.Nature reviews. Immunology · 2022
    Review
  4. Review
  5. Article
  6. Review
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

16 authors at 4 institutions in 2 countries.

Marine MommertJoint Research Unit Hospices Civils de Lyon-bioMérieux, Lyon Sud Hospital, Pierre-Bénite, France.ORCID 0000-0001-5624-7756
Magali PerretInternational Center of Research in Infectiology, Lyon University, INSERM U1111, CNRS UMR 5308, ENS, UCBL, Lyon, France.
Matthew HockinBioFire Diagnostics, LLC, Salt Lake City, UT, USA.
Sébastien VielInternational Center of Research in Infectiology, Lyon University, INSERM U1111, CNRS UMR 5308, ENS, UCBL, Lyon, France.
Alexandre BelotInternational Center of Research in Infectiology, Lyon University, INSERM U1111, CNRS UMR 5308, ENS, UCBL, Lyon, France.
Jean-Christophe RichardMedical Intensive Care Unit, Hospices Civils de Lyon, Croix Rousse Hospital, Lyon, France.
Mehdi MezidiMedical Intensive Care Unit, Hospices Civils de Lyon, Croix Rousse Hospital, Lyon, France.
Jean-Baptiste FassierService de médecine du travail et des pathologies professionnelles, Hospices Civils de Lyon, Centre Hospitalier Lyon Sud, Pierre-Bénite, France.
Etienne JavouheyPediatric Emergency Unit, Hôpital Femme Mère Enfants, Hospices Civils of Lyon, Lyon, France.
ANTOINE Study GroupJoint Research Unit Hospices Civils de Lyon-bioMérieux, Lyon Sud Hospital, Pierre-Bénite, France.
COVID-SER Study GroupService de médecine du travail et des pathologies professionnelles, Hospices Civils de Lyon, Centre Hospitalier Lyon Sud, Pierre-Bénite, France.
COVID-HCL Study GroupMedical Intensive Care Unit, Hospices Civils de Lyon, Croix Rousse Hospital, Lyon, France.
Andrew HemmertBioFire Diagnostics, LLC, Salt Lake City, UT, USA.
François MalletJoint Research Unit Hospices Civils de Lyon-bioMérieux, Lyon Sud Hospital, Pierre-Bénite, France.
Sophie Trouillet-AssantJoint Research Unit Hospices Civils de Lyon-bioMérieux, Lyon Sud Hospital, Pierre-Bénite, France.
Karen Brengel-PesceJoint Research Unit Hospices Civils de Lyon-bioMérieux, Lyon Sud Hospital, Pierre-Bénite, France.
Université Claude Bernard Lyon 1 · FRHospices Civils de Lyon · FRBioFire Diagnostics (United States) · USHôpital Femme Mère Enfant · FR

Funding

European Union's Horizon 2020 668303
6 · The paper itself

Abstract

Low concentrations of type-I interferon (IFN) in blood seem to be associated with more severe forms of Coronavirus disease 2019 (COVID-19). However, following the type-I interferon response (IR) in early stage disease is a major challenge. We evaluated detection of a molecular interferon signature on a FilmArray® system, which includes PCR assays for four interferon stimulated genes. We analyzed three types of patient populations: (i) children admitted to a pediatric emergency unit for fever and suspected infection, (ii) ICU-admitted patients with severe COVID-19, and (iii) healthcare workers with mild COVID-19. The results were compared to the reference tools, that is, molecular signature assessed with Nanostring® and IFN-α2 quantification by SIMOA® (Single MOlecule Array). A strong correlation was observed between the IR measured by the FilmArray®, Nanostring®, and SIMOA® platforms (r-Spearman 0.996 and 0.838, respectively). The FilmArray® panel could be used in the COVID-19 pandemic to evaluate the IR in 45-min with 2 min hand-on-time at hospitalization and to monitor the IR in future clinical trials.

Indexed as

AdultAgedChildCOVID-19FemaleHealth PersonnelHumansInterferon-alphaInterferon Type IMalePolymerase Chain ReactionSARS-CoV-2IFNA2 protein, humanInterferon-alphaInterferon Type IClinical applicationCOVID-19FilmArray®InterferonIn vitro diagnostic

Identifiers

PMID33314090
PMCPMC8248375
OpenAlexW3112294714

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.