Evidence map›Paper›PMID 33313861›Full record

ArticleMolecular biology and evolution2021

Genome Reduction Is Associated with Bacterial Pathogenicity across Different Scales of Temporal and Ecological Divergence.

Gemma G R Murray, Jane Charlesworth, Eric L Miller, Michael J Casey, Catrin T Lloyd, Marcelo Gottschalk, Alexander W Dan Tucker, John J Welch, Lucy A Weinert

Abstract readComparative Study
In one paragraph

Article in Molecular biology and evolution, 2021. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 58 papers.

0numbers the graph read from it
0cells of the map it votes in
58citing papers in PubMed
–field-weighted citation impact
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

58 citing papers in PubMed.

  1. Article
  2. Genomic diversity and virulence ofMicrobial genomics · 2026
    Article
  3. Article
  4. Review
  5. The Fires of Isengard Have Spread:Pathogens (Basel, Switzerland) · 2026
    Article
  6. Exploring the IS-capades ofMicrobial genomics · 2026
    Article
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. A phylogenetic approach to comparative genomics.Nature reviews. Genetics · 2025
    Review
  13. Article
  14. Phenotypic and genetic heterogeneity ofMicrobial genomics · 2025
    Article
  15. Article
  16. Article
  17. Genomic and functional divergence ofMicrobiology spectrum · 2024
    Article
  18. Article
  19. Queuosine salvage inMicrobiology (Reading, England) · 2024
    Article
  20. Convergent reductive evolution in bee-associated lactic acid bacteria.bioRxiv : the preprint server for biology · 2024
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

9 authors.

Gemma G R MurrayDepartment of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.
Jane CharlesworthDepartment of Genetics, University of Cambridge, Cambridge, United Kingdom.
Eric L MillerDepartment of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.
Michael J CaseyDepartment of Genetics, University of Cambridge, Cambridge, United Kingdom.
Catrin T LloydDepartment of Genetics, University of Cambridge, Cambridge, United Kingdom.
Marcelo GottschalkDépartement de Pathologie et Microbiologie, Université de Montréal, Montréal, QC, Canada.
Alexander W Dan TuckerDepartment of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.
John J WelchDepartment of Genetics, University of Cambridge, Cambridge, United Kingdom.
Lucy A WeinertDepartment of Veterinary Medicine, University of Cambridge, Cambridge, United Kingdom.

Funding

Biotechnology and Biological Sciences Research Council BB/G019274/1Biotechnology and Biological Sciences Research Council BB/L018934/1Wellcome Trust 109385/Z/15/Z
6 · The paper itself

Abstract

Emerging bacterial pathogens threaten global health and food security, and so it is important to ask whether these transitions to pathogenicity have any common features. We present a systematic study of the claim that pathogenicity is associated with genome reduction and gene loss. We compare broad-scale patterns across all bacteria, with detailed analyses of Streptococcus suis, an emerging zoonotic pathogen of pigs, which has undergone multiple transitions between disease and carriage forms. We find that pathogenicity is consistently associated with reduced genome size across three scales of divergence (between species within genera, and between and within genetic clusters of S. suis). Although genome reduction is also found in mutualist and commensal bacterial endosymbionts, genome reduction in pathogens cannot be solely attributed to the features of their ecology that they share with these species, that is, host restriction or intracellularity. Moreover, other typical correlates of genome reduction in endosymbionts (reduced metabolic capacity, reduced GC content, and the transient expansion of nonfunctional elements) are not consistently observed in pathogens. Together, our results indicate that genome reduction is a consistent correlate of pathogenicity in bacteria.

Indexed as

Biological EvolutionGenome, BacterialGenome SizeAnimalsBacteriaSymbiosisbacterial evolutionendosymbiontspathogenicityreductive genome evolution

Identifiers

PMID33313861
PMCPMC8042751

What OpenQuestion holds

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Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.