Evidence map›Paper›PMID 33313576›Full record

ArticleCurrent research in microbial sciences2020

Imaging living obligate anaerobic bacteria with bilin-binding fluorescent proteins.

Hannah E Chia, Tiancheng Zuo, Nicole M Koropatkin, E Neil G Marsh, Julie S Biteen

Open access · goldAbstract read
In one paragraph

Article in Current research in microbial sciences, 2020. The graph could read no effect estimate from its abstract, so it casts no vote on the map. Cited by 17 papers.

0numbers the graph read from it
0cells of the map it votes in
17citing papers in PubMed
2.2field-weighted citation impact, top 12% of its field
1 · What the graph read from it

What it found

Each row is one number read from the abstract, on the scale the paper reported it, with its interval. Left of the dashed line favours the treatment, right favours the comparator. Under each row is the sentence it came from. New to these charts? A ten-minute tutorial.

The abstract states no effect estimate the extractor could read, or names no intervention and outcome on the map, so this paper lights no cell and moves no belief. It is still indexed, cited and linked below.

2 · The registry

The trial behind it

Trials whose registry record cites this paper, or whose number appears in the abstract. A trial that started after this paper was published is citing it as background, not reporting it.

Neither the registry nor the abstract names a trial number. If this is a trial report, that itself is worth knowing.

3 · Its place in the literature

Who cites it

17 citing papers in PubMed, 34 citations in OpenAlex.

  1. Review
  2. Microbial single-cell applications under anoxic conditions.Applied and environmental microbiology · 2024
    Review
  3. Mechanisms of microbial co-aggregation in mixed anaerobic cultures.Applied microbiology and biotechnology · 2024
    Review
  4. Review
  5. Development and utilization of new OMicrobiology spectrum · 2024
    Article
  6. Review
  7. Article
  8. Article
  9. Article
  10. Article
  11. Article
  12. Article
  13. Article
  14. Article
  15. Article
  16. Characterization of flavin binding in oxygen-independent fluorescent reporters.AIChE journal. American Institute of Chemical Engineers · 2020
    Article
  17. Nanaerobic growth enables direct visualization of dynamic cellular processes in human gut symbionts.Proceedings of the National Academy of Sciences of the United States of America · 2020
    Article
4 · The record

Corrections and comments

PubMed lists nothing against this paper. Absence here is not a guarantee, only a check that was made.

5 · Who and what money

Authors and funding

5 authors at 1 institution in 1 country.

Hannah E ChiaProgram in Chemical Biology, University of Michigan, Ann Arbor, MI, USA.
Tiancheng ZuoDepartment of Chemistry, University of Michigan, Ann Arbor, MI, USA.
Nicole M KoropatkinDepartment of Microbiology and Immunology, University of Michigan Medical School, Ann Arbor, MI, USA.
E Neil G MarshDepartment of Chemistry, University of Michigan, Ann Arbor, MI, USA.
Julie S BiteenProgram in Chemical Biology, University of Michigan, Ann Arbor, MI, USA.
University of Michigan · US

Funding

Understanding hydrogen atom transfer reactions in enzymesR01GM093088 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI MARSH, E NEIL · 2010 to 2023
$3.5M
Assembly of a model glycan uptake system from a symbiotic human gut bacteriumR01GM118475 · NIGMS · UNIVERSITY OF MICHIGAN AT ANN ARBOR · PI KOROPATKIN, NICOLE M · 2016 to 2020
$1.8M
NIGMS NIH HHS R01 GM093088NIGMS NIH HHS R01 GM118475
6 · The paper itself

Abstract

Fluorescent tools such as green fluorescent protein (GFP) have been used extensively as reporters in biochemistry and microbiology, but GFP and other conventional fluorescent proteins are restricted to aerobic environments. This limitation precludes fluorescence studies of anaerobic ecologies including polymicrobial communities in the human gut microbiome and in soil microbiomes, which profoundly affect health, disease, and the environment. To address this limitation, we describe the first implementation of two bilin-binding fluorescent proteins (BBFPs), UnaG and IFP2.0, as oxygen-independent fluorescent labels for live-cell imaging in anaerobic bacteria. Expression of UnaG or IFP2.0 in the prevalent gut bacterium

Identifiers

PMID33313576
PMCPMC7731933
OpenAlexW3025174171

What OpenQuestion holds

Textmetadata
LicenceCC BY-NC-ND
Read underepoch 390

Registered trials

None linked

Read under generation 80e0d062 · epoch 390. Bibliography from PubMed, PubMed Central and OpenAlex; grants from NIH RePORTER; trial links from ClinicalTrials.gov; estimates, votes and beliefs from the OpenQuestion graph.